RNA id: TU825619


Basic Information

Item Value
RNA id TU825619
length 313
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G726759
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57557121 ~ 57557433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATATTGGTTtagttatttatttactagctaactaaatgatAACACCGGATAAACAAACACACTTAATACATTAGAAACTGGTCCCTAGCAGACTGACACTATATGGTGGCTTTTTATAaaagacatggagagggggagagagagagagggactgagacatAATACTTTGGTAGATTTATAaactactctcacagtaatcatatactttgcacatgaaccTTCTCCCTTTTGGAGTAAGCCAAGCCTTCTTGGAAAGGGTTTGGTTGGGCCTTTCCACGGCACGCTTGTAATGCTCTGATtttcttctccc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825618 lncRNA downstream 109 57555972 ~ 57557012 (-) True G726758
TU825617 lncRNA downstream 1435 57555053 ~ 57555686 (-) True G726757
TU825615 lncRNA downstream 5230 57551503 ~ 57551891 (-) True G726755
TU825614 lncRNA downstream 7409 57549416 ~ 57549712 (-) True G726754
TU825604 lncRNA downstream 9572 57547331 ~ 57547549 (-) True G726746
TU825605 lncRNA upstream 6504 57563937 ~ 57572374 (-) True G726747
TU825625 lncRNA upstream 25403 57582836 ~ 57583070 (-) True G726765
TU825626 lncRNA upstream 25875 57583308 ~ 57583525 (-) True G726766
TU825525 lncRNA upstream 43454 57600887 ~ 57601781 (-) True G726673
TU825635 lncRNA upstream 47593 57605026 ~ 57605398 (-) True G726775
XM_021613103.2 mRNA downstream 24827 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_021613099.2 mRNA downstream 45529 57485241 ~ 57511592 (-) False LOC110530214
XM_036985786.1 mRNA upstream 84345 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 84345 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 84345 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 84345 57641778 ~ 57720679 (-) False LOC110530221
XR_005052922.1 mRNA upstream 88226 57645659 ~ 57720684 (-) False LOC110530221
TU825404 other downstream 251595 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 420008 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 716995 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 967850 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1170605 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 247955 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 262614 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 305305 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4487602 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4623254 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile