RNA id: TU825605


Basic Information

Item Value
RNA id TU825605
length 2496
lncRNA type antisense_over
GC content 0.44
exon number 5
gene id G726747
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57563937 ~ 57572374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTTAAGTAACTTTATTATTTAGTATTTTATAATACATTCAGTTCAAGAACAGTCTACCAAGCTTGACTAAAAACAAGGCAAAAAATACAAGTGAGTTGTGTGGCATTGTTTTATGAACCCATCTGAGGGACTGGGACTAGTGGGGCAGATACAAAAGTCATGTATAGAACTGCCAACTTGTTTGGCAAAGGGAGTCAATAGTTGAAATTCTATACATTGCATTTTTATCTGTAACATTCTAAAATGTTGCACCCTCTTGAATAAGCCCCAGTTGTATGGGCCACCTTCACTCTGCAGGTGGGAATATACATTTTCCCCTAACCACTGATAGGGGGGTCATTACACTATTAAAGTTCAAATCTGATTGGGGGTACAGAAGGgttaactgatcctagatctgtggttaggggcaAATTCTGAGCCCGTTGGTCCATTGATTGGCAATAGTAAGGTCCTGAGCAATGTGGTTAAAAGTGGTTTACACCACAAACACTCCTTCCCTTCTACATACCTTAACTCAGACACACTCCACTGATCCAGGTTAATAGGTCATAGGAGCCCATTTCTGTTCACAAACAGTTCACTTCTGTTAAACTTTCCCTGTAAGTGTTCAACTGTAGGTGACTCCATACATGCATGGGCTATTGACTTAGAAATATCATAACAGATTGTCATATTTGTCTTTACATTATCTTAAAACATTTGAGGGTCATGGCCTGAAAAGAAAGAAGCGCTGAATACCACCATCACTGAACGTTAGTTGCATttcacagcagcaagattgaCATATGGATTAACAGCTCAGACTGCAGATTCATTTGAATTAGGATGTTGAGTCAGTCTAAGAATTAGATTATTTACAATCAAAAGCAGACGATCTCCTGGGGATGTTTACCGAATGATTACCATTCAAAACAAATATGTTTTATAAGAAATCAATGAAAAAAAACCCTGGTCTGTTCCTTCGGGTGACAATGCATTCAGAACATTTGCCTTATTGGCCTGAGACAGACCAGTTTCAGATAGAGCACAAAGAGTGCGCTTCTTTGATGTGCCAGGGCGTGAATTAAGTTCAAGCCTTCACTTTGAACAAGACACCACGTGCACGAGGCAGTGTCTGTAATGCAGCTGCAATATGCAAGCAGTCCAACATTGTGATGCTCTAAATATCCCTATGGCAAACTAAGTATCATACGGCcacattatttgtatttttttaaacacatttgATCATTTTAAATTctttaatataaaaaaaataagactTTGATATCTGTTGAGTGTAGTAGACCTTCCTAAAAAACCACTCACCCCCCTCTCTGCCAAGTGCAGTGCAATTTCaataacaaagagaaaacagcctgccttcttttttttttatcatccaGACAAAGGCCAATCAGGCAGGGCAATCGTTCCCTACTCCACATGCAAAaggaaaagggaggagagaaggagaaaagagggagggaggacagtggggaaagatggggTCTTTTTGACATCCCTGCAGCCCCCACTCCTACCAGCCCATTTCCAGTCCAATTCTGGGAATAAATTAATAAGCGGTCACACAATAGCATCGGTCAGGtggtgagtgtgagtgagtgtgtacatgcgtgcacgtgtttgtgtgtgagacgtTAAGGAGAAAAGTGATGGTCAGAATGTGTGTATTTAGGTAGACATGTTATACAAAGGGAACCCTTGTCTGTGTGTATCAGTATGTCTGTGGTGAATTAGTGCAGTGAGCGGAGATCCATTTTGCAGTGGCAGGGGAAGGACGGTGAGTGGAAGGTGGGGGACACTGAGGTGGGGGTACGAGATGTGGCACGGTGGGCGTGGGCCAGTTAGAAGCGGATGAAGGTGGCATCGATCTGGCGTACGGTGGGCAGCGCCAGCATGATCTTCCTGCGGTATTGGGGGTCCTTCTGTAAGGGGTTCCTCTCCAGGTACACCGTCTCCAGGGCCTTGGAGCTCTTCAGCTCATCCAGATCTGACCAGTTCTCTATCTGATTATCATTCatCCAGAACTCCTGTAGGTCTGTTAAATGGCTGATGTTTTCAATTTTCTTCACCCGGTTGGCTGCGATGTCCAGAGTTGTCAGCTTTTGTTGTTCTCCAGGCCCTCGATGACCTCGATGCCATTGTGACTCAGGTAGAGCTCCTTCAGGTTGACCAGACCCTGCAGACCCTCCATCTTGGTGATGCGGTTACTctggatgCTAAGGACTGTCAGATTGTGTAGGCCCTCCAGATGCTGAAACTGCGTGATCTTGTTGGTGCCCAGAAACAGACTTGTCAAGGAGGACAGCGAGTCCAAATTCTCAATTACCCGGATGCGGTTAGAGCCCAGCTCCAGCATCTCCAGGCCGGTGAGATGGTCCAAATTGGCGATGTGGCTTATCTTGTTGTGCAGCAGGAATAGCTTCTTCAGCCCCGTCAGACGCTCCAGACCCTCCACCTTCCTCAGAAGATTGAAGGACACGTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825619 lncRNA downstream 6504 57557121 ~ 57557433 (-) True G726759
TU825618 lncRNA downstream 6925 57555972 ~ 57557012 (-) True G726758
TU825617 lncRNA downstream 8251 57555053 ~ 57555686 (-) True G726757
TU825615 lncRNA downstream 12046 57551503 ~ 57551891 (-) True G726755
TU825614 lncRNA downstream 14225 57549416 ~ 57549712 (-) True G726754
TU825625 lncRNA upstream 10462 57582836 ~ 57583070 (-) True G726765
TU825626 lncRNA upstream 10934 57583308 ~ 57583525 (-) True G726766
TU825525 lncRNA upstream 28513 57600887 ~ 57601781 (-) True G726673
TU825635 lncRNA upstream 32652 57605026 ~ 57605398 (-) True G726775
TU825636 lncRNA upstream 34236 57606610 ~ 57606957 (-) True G726776
XM_021613103.2 mRNA downstream 31643 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_021613099.2 mRNA downstream 52345 57485241 ~ 57511592 (-) False LOC110530214
XM_036985786.1 mRNA upstream 69404 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 69404 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 69404 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 69404 57641778 ~ 57720679 (-) False LOC110530221
XR_005052922.1 mRNA upstream 73285 57645659 ~ 57720684 (-) False LOC110530221
TU825404 other downstream 258411 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 426824 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 723811 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 974666 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1177421 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 233014 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 247673 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 290364 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4472661 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4608313 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile