RNA id: TU825524


Basic Information

Item Value
RNA id TU825524
length 575
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G726672
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57610188 ~ 57610762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTTTATAGGGCTGTTCCACTCCTAATATATATCCTGGTATTATACTAGAGAAAGTGTTCTCAGTGTGGGCTGACACTAACGACATGTTAAAAGCAGCATCAACAACTTCTGAATCCCCTGAACAGTTGCTTTTTATAAGGAAAAGGCCCAATTGATATGCTAACAGTTAACCTTTGCCATGTTCACGCACCAAGTCCCAGTCTGGCCCCATGTCAGGGTCAAAAGCCTGCGTCTTCAGGCCAAACACCAGGGGTACAGTCTTAAAGTGGAAAAGCAAGATTAGTTTGTGGTACAGTACCGCTATGCGCTCCCTCTTGGGTGCCAGTGGTTGGCTCGGCGGCGGCTGAGGGGGCAGGGCCTGTTGCTGGGGCTGGGCGGGGCTTAACATGACAGGCGCCGTTTGGACAGGGGGTGTGTGGCTGTACTGGGGCTGGGCCGGGTAGTAGGCACCTGCTgtagggggggggagaggagggaggcaagTCAAACACAGCACAAAAAgcaacacacaatcacacactaaAATGACCACAAACATACCATACAGACTAAACAAGCATTGAAATAACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825637 lncRNA downstream 2597 57607355 ~ 57607591 (-) True G726777
TU825636 lncRNA downstream 3231 57606610 ~ 57606957 (-) True G726776
TU825635 lncRNA downstream 4790 57605026 ~ 57605398 (-) True G726775
TU825525 lncRNA downstream 8407 57600887 ~ 57601781 (-) True G726673
TU825626 lncRNA downstream 26663 57583308 ~ 57583525 (-) True G726766
TU825512 lncRNA upstream 4872 57615634 ~ 57616017 (-) True G726665
TU825641 lncRNA upstream 17215 57627977 ~ 57628193 (-) True G726781
TU825660 lncRNA upstream 53562 57664324 ~ 57678317 (-) True G726800
TU825661 lncRNA upstream 67098 57677860 ~ 57678657 (-) True G726801
TU825679 lncRNA upstream 111346 57722108 ~ 57722347 (-) True G726819
XM_021613103.2 mRNA downstream 77894 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_021613099.2 mRNA downstream 98596 57485241 ~ 57511592 (-) False LOC110530214
XM_036985786.1 mRNA upstream 31016 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 31016 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 31016 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 31016 57641778 ~ 57720679 (-) False LOC110530221
XR_005052922.1 mRNA upstream 34897 57645659 ~ 57720684 (-) False LOC110530221
TU825404 other downstream 304662 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 473075 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 770062 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 1020917 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1223672 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 194626 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 209285 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 251976 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4434273 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4569925 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile