RNA id: TU825512


Basic Information

Item Value
RNA id TU825512
length 384
lncRNA type antisense_over
GC content 0.63
exon number 1
gene id G726665
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57615634 ~ 57616017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGGCAGCGGCACATGTTGGCGTAGGCCACGGAGAAGTTGGGCTCGGAGATGGCCTTCTCAAAGATGAGGTCGATCACTCCCTTCAGCCGCTCCTCCGTGTCGATGGTCAGCTCTGTGACCTGTTTCATCAGTTGCTGGAACATCTGAGGGGTCAGCTTGTTGAGGATGGAGCGGACCCTCTTGAAGAGCTCCTGGGTCTTGGCCTGCTCGGGGTCgtcgctctcctcctcctcggGGCCGGTCCCGCGGCTCCCCGCCATCTTCACCGCGGGCTTCCAGGCTTTCTCTGCCTTGTTGAGCTCCACGTCACCGCCTAGCGATGAGGAGATGATGATCTTGCGGGGCTCCTTGCGCTGGCCCTGCTGGGAGCGCCGGGGTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825524 lncRNA downstream 4872 57610188 ~ 57610762 (-) True G726672
TU825637 lncRNA downstream 8043 57607355 ~ 57607591 (-) True G726777
TU825636 lncRNA downstream 8677 57606610 ~ 57606957 (-) True G726776
TU825635 lncRNA downstream 10236 57605026 ~ 57605398 (-) True G726775
TU825525 lncRNA downstream 13853 57600887 ~ 57601781 (-) True G726673
TU825641 lncRNA upstream 11960 57627977 ~ 57628193 (-) True G726781
TU825660 lncRNA upstream 48307 57664324 ~ 57678317 (-) True G726800
TU825661 lncRNA upstream 61843 57677860 ~ 57678657 (-) True G726801
TU825679 lncRNA upstream 106091 57722108 ~ 57722347 (-) True G726819
TU825762 lncRNA upstream 233240 57849257 ~ 57849704 (-) True G726890
XM_021613103.2 mRNA downstream 83340 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_021613099.2 mRNA downstream 104042 57485241 ~ 57511592 (-) False LOC110530214
XM_036985786.1 mRNA upstream 25761 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 25761 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 25761 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 25761 57641778 ~ 57720679 (-) False LOC110530221
XR_005052922.1 mRNA upstream 29642 57645659 ~ 57720684 (-) False LOC110530221
TU825404 other downstream 310108 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 478521 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 775508 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 1026363 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1229118 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 189371 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 204030 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 246721 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4429018 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4564670 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile