RNA id: TU827186


Basic Information

Item Value
RNA id TU827186
length 801
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G728222
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59104752 ~ 59105830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTTTTCCCTCTCATCTCTATTTCTCTACATCTCTATTTCCCTacatctctatttccctctcatctctatttccctacatctctatttccctacatctctatttccctctcatcTATTTCTCTacatctctatttccctctcatctctatttccctacatctctatttccctcttatctctatttccctacatctctatttccctctcatcTCTATTTCCTTACATCTCTATTTCCCTCTTATCTCTATTTCCCTacatctctatttccctctcatcTCTATTTCCCTACATCTCTATTTCCCTCTCATCTCTATTTACCTacatctctatttccctctcatctctatttccctacatctctatttccctctcatctctatttccctacatctctatttctctctcatctctatttccctacatctctatttccctctcatctctatttccctctcatctctatttccctacatctctatttccctctcatctctatttccctacatctctatttccctctcatctctatttccctacatctctatttccctctcattTCCCTACATCTCTATTTCCCTTCATCTCTATTTCCCTacatctctatttccctctcatctctatttccctctcatctctatttccctctcatcTCTATTTCCCTACATCTCTATTTCCCTTCATCTCTATTTCCCTacatctctatttccctctcatctctatttccctacatctctatttccctacatctctatttccctctcatcTCTTTCGCCATGAGCCAAACCCTGCTTCTTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827010 lncRNA downstream 123472 58980900 ~ 58981280 (-) True G728058
TU826828 lncRNA downstream 259412 58845060 ~ 58845340 (-) True G727888
TU826577 lncRNA downstream 464519 58639896 ~ 58640233 (-) True G727649
TU826494 lncRNA downstream 589953 58508837 ~ 58514799 (-) False G727570
TU827188 lncRNA upstream 58 59105888 ~ 59106231 (-) True G728224
TU827190 lncRNA upstream 1286 59107116 ~ 59107396 (-) True G728226
TU827681 lncRNA upstream 5293 59111123 ~ 59112427 (-) False LOC110530949
TU827680 lncRNA upstream 5331 59111161 ~ 59112427 (-) False LOC110530949
TU827679 lncRNA upstream 5413 59111243 ~ 59112427 (-) True LOC110530949
XM_021613131.2 mRNA downstream 627110 58476472 ~ 58477642 (-) True LOC110530234
XR_005052925.1 mRNA downstream 913756 58182632 ~ 58190996 (-) False LOC118965534
trnav-aac-153 mRNA downstream 1181458 57923222 ~ 57923294 (-) True trnav-aac-153
trnaw-cca-3 mRNA downstream 1182978 57921703 ~ 57921774 (-) True trnaw-cca-3
XM_036985795.1 mRNA downstream 1194612 57876797 ~ 57910140 (-) True LOC110530229
XM_036985808.1 mRNA upstream 5293 59111123 ~ 59146231 (-) False LOC110530949
XM_036985809.1 mRNA upstream 5293 59111123 ~ 59146231 (-) False LOC110530949
XM_036985810.1 mRNA upstream 5293 59111123 ~ 59146231 (-) False LOC110530949
XM_036985811.1 mRNA upstream 5293 59111123 ~ 59146231 (-) False LOC110530949
XM_021613138.2 mRNA upstream 108564 59214394 ~ 59243807 (-) False LOC110530239
TU825771 other downstream 1240875 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1258063 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1293330 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 1799226 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 1967639 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2939205 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 3074857 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5884471 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 6412337 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6995266 66101096 ~ 66101627 (-) True G736841

Expression Profile