RNA id: TU827728


Basic Information

Item Value
RNA id TU827728
length 331
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G728712
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59163383 ~ 59167725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCGGACAAACAAACTGAGTGGTGACATcccaaaatatacacatttcacctCACATGGCCATTGCGGACATGACACATGGTGGATGCAAAAACAATTTGTGTATCTCTAATAATTTAATAACAATGAGATAGGTACATGTAGTAGTTccagaaaataatatatatttacaaaaagtgGGTAACCTGGAAGGCAAGACCAATCAAAGTGACATATTCATGTAAGAAATGGTCTGATATCAAACTCttggttcagacctctaggagacatGGTACACAAATGGTGAATCCAATACAATTCTCTTCTGAATACTAGATGATCAGTATCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827681 lncRNA downstream 50956 59111123 ~ 59112427 (-) False LOC110530949
TU827680 lncRNA downstream 50956 59111161 ~ 59112427 (-) False LOC110530949
TU827679 lncRNA downstream 50956 59111243 ~ 59112427 (-) True LOC110530949
TU827190 lncRNA downstream 55987 59107116 ~ 59107396 (-) True G728226
TU827188 lncRNA downstream 57152 59105888 ~ 59106231 (-) True G728224
TU827742 lncRNA upstream 17596 59185321 ~ 59185625 (-) True G728725
TU827766 lncRNA upstream 113274 59280999 ~ 59281213 (-) True G728749
TU827701 lncRNA upstream 119203 59286928 ~ 59288820 (-) False LOC110530240
TU827770 lncRNA upstream 122793 59290518 ~ 59290850 (-) True G728753
TU827771 lncRNA upstream 126687 59294412 ~ 59294648 (-) True G728754
XM_036985808.1 mRNA downstream 17152 59111123 ~ 59146231 (-) False LOC110530949
XM_036985809.1 mRNA downstream 17152 59111123 ~ 59146231 (-) False LOC110530949
XM_036985810.1 mRNA downstream 17152 59111123 ~ 59146231 (-) False LOC110530949
XM_036985811.1 mRNA downstream 17152 59111123 ~ 59146231 (-) False LOC110530949
XM_021613131.2 mRNA downstream 685741 58476472 ~ 58477642 (-) True LOC110530234
XM_021613138.2 mRNA upstream 46669 59214394 ~ 59243807 (-) False LOC110530239
XM_021613139.2 mRNA upstream 46669 59214394 ~ 59248869 (-) False LOC110530239
XM_036985813.1 mRNA upstream 48729 59216454 ~ 59243810 (-) True LOC110530239
XM_021613136.2 mRNA upstream 81977 59249702 ~ 59279534 (-) False LOC110530238
XM_021613135.2 mRNA upstream 81977 59249702 ~ 59279537 (-) True LOC110530238
TU825771 other downstream 1299506 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1316694 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1351961 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 1857857 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2026270 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2877310 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 3012962 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5822576 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 6350442 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6933371 66101096 ~ 66101627 (-) True G736841

Expression Profile