RNA id: TU827742


Basic Information

Item Value
RNA id TU827742
length 305
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G728725
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59185321 ~ 59185625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcctatcctcagtgcagtgggcagctgggaggaggtgctcttattctccatggactttacagtgtcctaaaacgttttggaattagtgctacaggaagcaaatttctgtttgaaaaagctatccttagctttcctaactgactgagtatattggttcctgacttccctgaaaagttgcatatcgcagaggatatttgatgctaatgcagaatgtcACTGTATGTTTTTGTTCTGGTCAAGGGCCGttaagtctggggtgaaccaagagctatatctgctcttagttctacatttttttgaatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827728 lncRNA downstream 17596 59163383 ~ 59167725 (-) True G728712
TU827727 lncRNA downstream 19592 59162558 ~ 59165729 (-) True G728711
TU827681 lncRNA downstream 72894 59111123 ~ 59112427 (-) False LOC110530949
TU827680 lncRNA downstream 72894 59111161 ~ 59112427 (-) False LOC110530949
TU827679 lncRNA downstream 72894 59111243 ~ 59112427 (-) True LOC110530949
TU827766 lncRNA upstream 95374 59280999 ~ 59281213 (-) True G728749
TU827701 lncRNA upstream 101303 59286928 ~ 59288820 (-) False LOC110530240
TU827770 lncRNA upstream 104893 59290518 ~ 59290850 (-) True G728753
TU827771 lncRNA upstream 108787 59294412 ~ 59294648 (-) True G728754
TU827714 lncRNA upstream 109279 59294904 ~ 59297430 (-) False LOC110530240
XM_036985808.1 mRNA downstream 39090 59111123 ~ 59146231 (-) False LOC110530949
XM_036985809.1 mRNA downstream 39090 59111123 ~ 59146231 (-) False LOC110530949
XM_036985810.1 mRNA downstream 39090 59111123 ~ 59146231 (-) False LOC110530949
XM_036985811.1 mRNA downstream 39090 59111123 ~ 59146231 (-) False LOC110530949
XM_021613131.2 mRNA downstream 707679 58476472 ~ 58477642 (-) True LOC110530234
XM_021613138.2 mRNA upstream 28769 59214394 ~ 59243807 (-) False LOC110530239
XM_021613139.2 mRNA upstream 28769 59214394 ~ 59248869 (-) False LOC110530239
XM_036985813.1 mRNA upstream 30829 59216454 ~ 59243810 (-) True LOC110530239
XM_021613136.2 mRNA upstream 64077 59249702 ~ 59279534 (-) False LOC110530238
XM_021613135.2 mRNA upstream 64077 59249702 ~ 59279537 (-) True LOC110530238
TU825771 other downstream 1321444 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1338632 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1373899 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 1879795 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2048208 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2859410 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2995062 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5804676 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 6332542 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6915471 66101096 ~ 66101627 (-) True G736841

Expression Profile