RNA id: TU828002


Basic Information

Item Value
RNA id TU828002
length 1346
lncRNA type read_through
GC content 0.38
exon number 2
gene id G728967
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59682341 ~ 59690814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGAAACAACTTACTAGCTGTCTTTTTCTATTTTTGGGATTTCTAGAAATGTGGTTGTAGTATCAACACTTgtgtatttttttcacccaacagTTCCATTGTCAGTCTGCACGTTTTGGTAGTGGTGGCTTTTACCGTTTTGTTGGAGGAAAGACCATGAGTGTTGTGCTTGCTGAACAATTTCTAAAATGCATGTAACATTTGATACTGAGATCTCACTACTTCCACACAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGGTACATTATCATTCATCAAATTAAACTTTTTTGAGCAAGTTTAACAAATAAATGTGACCTACTTTTCTCTTTTCGTGTGTACATCGAGAGGTAATTTCTATTTCGTGTTTCCTCTTAAGCTGAAAACGGCTGGAACGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAAATGTTTCATGTTATAGTGAATTACTTTGAAGGTATTTGTTGCTGTAAAATACGTTTGACTTGTTGTGTAACTATTGTAGCTTGTCAATAAAACTGGTGTACGTATTTAATCTCATGAGTGGTTATTAAACATTGCTTCACTTTGTTTCTTGAAGAAGCAGTCTGGGTGTCTGTTCAGTGGGCATTTAAATTATTTGATTGTTGATCCATTGTTTCTTGAAGAATAGAATTCTCTTAGGACCCAAAAAGTTGTCTTACTCCACAAACATTAACGTAAACgaacagtgtgtgtatatagcttTAAAATAAGTAgaaaatgatcatgctgttgtcAGAGCACTCTGTGAATTTTAAGTGTTACATTTCCCTACCCCATCTGTTCCctatccaattttatttgtcacgtacacatggttagcagatgctaatgcgagtgtagagaaatgcttgtgcttctagttctaacCATGCAGTAAAATCGAACAAGTTCACATATGtacataaaacaatatatatattcaacCACAAGGGTGTATTAatgaaggggggtgggggggggtgaatTATAATAGAGGCCTACTGAAAGGATATTATTTCAGTGTAGATGAGGGCAGGTTAAAAGAAAAACATGACAGCCAGACAAGCCAGTGACTGAATCAAAAGGATTTACATCTGAATGGAGTGGACATCAGCTTACTTTGATCTGTAAGGTAAGTCACTTTAATGTGTCAAGCAGAATACACGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU827983 lncRNA downstream 18967 59663172 ~ 59663374 (-) True G728960
TU827978 lncRNA downstream 27003 59655113 ~ 59655338 (-) True G728955
TU827977 lncRNA downstream 27432 59654683 ~ 59654909 (-) True G728954
TU827976 lncRNA downstream 27991 59654106 ~ 59654350 (-) True G728953
TU827950 lncRNA downstream 84439 59597694 ~ 59597902 (-) True G728929
TU828007 lncRNA upstream 12476 59703290 ~ 59710991 (-) True G728969
TU828021 lncRNA upstream 25675 59716489 ~ 59724668 (-) True G728977
TU828006 lncRNA upstream 34720 59725534 ~ 59727096 (-) True LOC110530244
TU828044 lncRNA upstream 76865 59767679 ~ 59768045 (-) True G729000
TU828048 lncRNA upstream 83030 59773844 ~ 59774151 (-) True G729004
XM_036985817.1 mRNA downstream 2723 59675762 ~ 59679618 (-) True LOC110513039
XM_021613142.2 mRNA downstream 13898 59416408 ~ 59668443 (-) False LOC110530242
XM_021613143.2 mRNA downstream 13898 59416408 ~ 59668443 (-) False LOC110530242
XM_021613144.2 mRNA downstream 13898 59416408 ~ 59668443 (-) False LOC110530242
XM_021613147.2 mRNA downstream 13898 59416408 ~ 59668443 (-) False LOC110530242
XM_036985820.1 mRNA upstream 6423 59697237 ~ 59701083 (-) True LOC118965535
XM_036985821.1 mRNA upstream 13531 59704345 ~ 59708192 (-) True LOC110530246
XM_036985822.1 mRNA upstream 20688 59711502 ~ 59715308 (-) True LOC118965536
XR_005052927.1 mRNA upstream 27804 59718618 ~ 59720310 (-) True LOC118965537
XR_002474499.2 mRNA upstream 34611 59725425 ~ 59727118 (-) False LOC110530244
TU825771 other downstream 1818464 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 1835652 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 1870919 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 2376815 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 2545228 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 2354221 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 2489873 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 5299487 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 5827353 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 6410282 66101096 ~ 66101627 (-) True G736841

Expression Profile