RNA id: TU829157


Basic Information

Item Value
RNA id TU829157
length 214
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G730050
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 60707626 ~ 60707839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGTGTAGAtctctcaacaatcattctcaaGATAGCACAATGGgaatagtcagtgacaaatatcatagCTAACCAGGGCTTGACTTGGTTAAACCCTGGTTAGAAGACTAAAGGGTAGCTGTAGATAAATCAATTAtctagtaggaggtgctgcccagcccattgtttttttctgatagtggatataacgttgaagatctgatgttgttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU829108 lncRNA downstream 57861 60649530 ~ 60649765 (-) True G730002
TU829104 lncRNA downstream 62163 60645248 ~ 60645463 (-) True G729998
TU829086 lncRNA downstream 110017 60597008 ~ 60597609 (-) True G729985
TU829081 lncRNA downstream 120766 60586162 ~ 60586860 (-) True G729981
TU828968 lncRNA downstream 259753 60442718 ~ 60447873 (-) True G729874
TU830349 lncRNA upstream 117205 60825044 ~ 60854710 (-) True G731088
TU830407 lncRNA upstream 197991 60905830 ~ 60906328 (-) True G731141
TU830420 lncRNA upstream 221619 60929458 ~ 60934167 (-) True G731152
TU830502 lncRNA upstream 332663 61040502 ~ 61042179 (-) True G731226
TU830437 lncRNA upstream 339720 61047559 ~ 61048552 (-) True G731168
XM_036985858.1 mRNA downstream 80150 60603236 ~ 60627476 (-) True LOC110530262
XM_036985860.1 mRNA downstream 80164 60603236 ~ 60627462 (-) False LOC110530262
XM_036985863.1 mRNA downstream 80177 60603236 ~ 60627449 (-) False LOC110530262
XM_036985877.1 mRNA upstream 410260 61118099 ~ 61140459 (-) False LOC110530271
XM_036985878.1 mRNA upstream 410260 61118099 ~ 61140459 (-) False LOC110530271
XM_036985874.1 mRNA upstream 410261 61118100 ~ 61140459 (-) False LOC110530271
XM_036985880.1 mRNA upstream 410261 61118100 ~ 61140459 (-) False LOC110530271
XM_036985882.1 mRNA upstream 410261 61118100 ~ 61140459 (-) False LOC110530271
TU825771 other downstream 2843749 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 2860937 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 2896204 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 3402100 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 3570513 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 1337196 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 1472848 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 4282462 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 4810328 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 5393257 66101096 ~ 66101627 (-) True G736841

Expression Profile