RNA id: TU830437


Basic Information

Item Value
RNA id TU830437
length 994
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G731168
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61047559 ~ 61048552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgtggtaaaagaccaagtccatattatggcaagaacagctcaaataagcaaagaaatgacagtccgtcattactttaagacatgaaggtcagtcaacacagaacattttaagaactttgaaagtttcttcaaatgcagtagcaaaaaccatcaagcgctatgatgaaactgaaaCAGGAAAGCTGCAGAGGACaacttcattagagttaccagcctcagaaatcgcagCCCACATAAattcttcagagttcaagtaactgacacatctcaacatcaactgttcagaggagactgcgtgaatcatgccttcatggtagaattgctgcaaagaaacccctactaaaggacaccaataataagaagagacttgcttgagcaaAGAAACGCAAccaatgaacattagactggtggaatctgtcctttggtctgatgagtccaaattttagatttttggttccaaccactgtgtctttgtgagacgtagagtaggtgatcttcgcatgtgtggttcccaccgtgaagcatggaggaggtggtgtgatggtgtattgctggtgacactgtctgatttatttagaattcaagttacacttaaccagcattgctaccacagcattctgcagcgatacgctatcccatctggtttgcgctaagtgggactatcatttgtttttcaacaagacaatgacccaacacatctccaggctgtataagggctatttaaccaataaggagagtgatggagtgctgcatcagatgacctggccaccacaatcacccgacctcaacccaatttaaatggtttgagatgagttggaccacagagtgaaggaaaagcagccaacaagtgccatGCAGGtgtgggaactccatcaagactgttggaaaagcattccaggtgaagctggttgagagaatgcaaagagtgtgcaaagctgtcatcaaggcagagggtggcaactttgaagaatctcaaatttccaatatatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU830502 lncRNA downstream 5380 61040502 ~ 61042179 (-) True G731226
TU830420 lncRNA downstream 113392 60929458 ~ 60934167 (-) True G731152
TU830407 lncRNA downstream 141231 60905830 ~ 60906328 (-) True G731141
TU830349 lncRNA downstream 192849 60825044 ~ 60854710 (-) True G731088
TU829157 lncRNA downstream 339720 60707626 ~ 60707839 (-) True G730050
TU830434 lncRNA upstream 315 61048867 ~ 61051329 (-) False G731166
TU830435 lncRNA upstream 2173 61050725 ~ 61051761 (-) True G731166
TU830505 lncRNA upstream 3711 61052263 ~ 61052542 (-) True G731229
TU830506 lncRNA upstream 4050 61052602 ~ 61052874 (-) True G731230
TU830508 lncRNA upstream 5230 61053782 ~ 61053987 (-) True G731232
XM_036985858.1 mRNA downstream 420083 60603236 ~ 60627476 (-) True LOC110530262
XM_036985860.1 mRNA downstream 420097 60603236 ~ 60627462 (-) False LOC110530262
XM_036985863.1 mRNA downstream 420110 60603236 ~ 60627449 (-) False LOC110530262
XM_036985877.1 mRNA upstream 69547 61118099 ~ 61140459 (-) False LOC110530271
XM_036985878.1 mRNA upstream 69547 61118099 ~ 61140459 (-) False LOC110530271
XM_036985874.1 mRNA upstream 69548 61118100 ~ 61140459 (-) False LOC110530271
XM_036985880.1 mRNA upstream 69548 61118100 ~ 61140459 (-) False LOC110530271
XM_036985882.1 mRNA upstream 69548 61118100 ~ 61140459 (-) False LOC110530271
TU825771 other downstream 3183682 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 3200870 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 3236137 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 3742033 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 3910446 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 996483 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 1132135 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 3941749 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 4469615 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 5052544 66101096 ~ 66101627 (-) True G736841

Expression Profile