RNA id: TU830600


Basic Information

Item Value
RNA id TU830600
length 1969
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G731287
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61157931 ~ 61160872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATCTTCAATATTTTATTAGCAAACAAGAAAAAAGTTAACTAAACATTTTACCGAATAACTTGAGTTTATGTACAGATCTAAGTATACTACAATATATACTATTATAATACAACTGGCTTACAATATATGTAATTAGTACAGCAGTCTCAAAAAAACAAACTTCAAGTTTGTCAAATCAGTGTTGTCTGAGTTAGGCAAGTTTAACATTTCCTTTTTATTCTTCCTTGGACTGAAAATATCACTATTTGTTTGAGTTTAGCTAGTACATGCTCTATTCTCACAGTCCCTCTTTTTCTGAAAGTGCTGAGTTTGACATTTTGTTCACTCAAAAGAAAAGCCAtggagctttaaaaaaaaaatgttacctGCAATTGTTTTTTTTGGCCGGTACAAATATAACTGCTTTTTGCCATAATAAGAAACCTTGTCCAGAAGTCAGGCCAAGACTCAGTAAGACTAAATGTTTTAAGGCCATAAGCTGATAATGGCAGCATCCAAAGTTACCATGTCATTCTAGAACAACAAGGTGATCTGGAATACTCCAAAATATTGGTTGGCAACAAAAGTGTAAACTCAATTCATGAGACCTCTACCTTTTGAGGCCGGGGCCTATCAACACCGCAACCCACTTTTAGGTTGAAATTCCGACAAACAAACCAGGAGTTATGTTTTATAATGTCTGGAGAGGAATTTAATGCCACAAAAACTGATCTGTGTAACAACTACACAGTTTGCCTATAAGTTTACATTCAACTGCATTAGATGAACAACCAATTGGAAATATACTTCAAACACCACAGTGAGATGTAGTTTTGTGTTTATGAGATACCAAATGTACCTTCTCCATGACACCTTTCAATGATTTCTCAAGGGATACATCACGTTCTGCACCAAAAGATCAAGACATCTCATGTCACACTCACCAACTAGGCATACATGTTAACAGCACTTTAATATATCCCATTGGCCCAGTTCTTTTTTGAGTGATTCAAATTGTGGATGTTGTGTTGAAATTCTAGAGCTGAATAGCAGTAAAGCAACTAGGCATAACATTCTTAGTAATACAAGCTGATTGTTGGTTCCAAATAATTAAAATgaatcattctatttctatgcttggGTCATCTCAAGTTTATTCTAATGTTCCCATTAGTTGTTCCCAAGAGCAATAAAGGTAGCATATAGGGCTCAACACACCCCTGCACAACAACATGCCTTAATTCCATCTCTTGAATTCCAAGTGCAAaagtaaatgtattatttcaatTGAATAATAAAATGCTAGCATTGCATGTTCTCAAAACAACTAAAACTGCAGGCGGTTCATGGAAAAATAATGATCAGCTATTCTTGAATTGATGGATCTTTCCTTATCATCTATCAACATGaactatgtacacacacacacacacatacagtgccttgcgaaagtattcggtccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtctttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaacgtaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctataagttttgcacatcgagagactgaaattttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcatatTCTTGTTGatagacaaatctccgtcccagtctcaggtcttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU830551 lncRNA downstream 69186 61086151 ~ 61089660 (-) True G731256
TU830508 lncRNA downstream 104859 61053782 ~ 61053987 (-) True G731232
TU830506 lncRNA downstream 105972 61052602 ~ 61052874 (-) True G731230
TU830505 lncRNA downstream 106304 61052263 ~ 61052542 (-) True G731229
TU830435 lncRNA downstream 107085 61050725 ~ 61051761 (-) True G731166
TU830608 lncRNA upstream 9312 61170126 ~ 61170426 (-) True G731292
TU830611 lncRNA upstream 12220 61173034 ~ 61173261 (-) True G731295
TU830683 lncRNA upstream 127498 61288312 ~ 61288553 (-) True G731360
TU830667 lncRNA upstream 134549 61295363 ~ 61297184 (-) True G731344
TU830688 lncRNA upstream 145506 61306320 ~ 61306549 (-) True G731365
XM_036985875.1 mRNA downstream 18220 61118100 ~ 61140626 (-) False LOC110530271
XM_036985887.1 mRNA downstream 18258 61118101 ~ 61140588 (-) False LOC110530271
XM_036985888.1 mRNA downstream 18258 61118102 ~ 61140588 (-) False LOC110530271
XM_036985898.1 mRNA downstream 18330 61118102 ~ 61140516 (-) False LOC110530271
XM_036985874.1 mRNA downstream 18387 61118100 ~ 61140459 (-) False LOC110530271
XM_021613195.2 mRNA upstream 24171 61184985 ~ 61189649 (-) False si:dkey-97a13.12
XM_021613196.2 mRNA upstream 24178 61184992 ~ 61189646 (-) True si:dkey-97a13.12
XM_021613197.2 mRNA upstream 29018 61189832 ~ 61200997 (-) True adhfe1
XM_021613198.2 mRNA upstream 60957 61221771 ~ 61233430 (-) True LOC110530276
XM_021611264.2 mRNA upstream 73059 61233873 ~ 61239771 (-) True LOC110529124
TU825771 other downstream 3294969 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 3312157 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 3347424 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 3853320 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 4021733 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 884221 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 1019873 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 3829487 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 4357353 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 4940282 66101096 ~ 66101627 (-) True G736841

Expression Profile