RNA id: TU830608



Basic Information


Item Value
RNA id TU830608
length 301
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G731292
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61170126 ~ 61170426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGCCAGGCAGCAGCTTGGCTATCTCAGCCCAGCGGTTCCCGATACGTTTGTGAGCAGCGTATATGATTCGATCCTCCTCCTGAGTCCAGCACGACTTCTTCACCTCAGGGTTAAGGTGGTTGTGCCAGCGCTCCCGGCACTGCTTGCCGATACGCCCGTGCAGATGCTTGGCAATGATGGACCAGCGCTTGGGGCCATACCTGTGCACCAACTCGATGACCTGTGCACAGATACATTGACACACAGCAAGATTAATAATTTGTGAATGTTTGATACATACACACTACatggacaaaagta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU830599 lncRNA downstream 9254 61159381 ~ 61160872 (-) True G731287
TU830600 lncRNA downstream 9312 61158846 ~ 61160814 (-) False G731287
TU830598 lncRNA downstream 9312 61159381 ~ 61160814 (-) False G731287
TU830597 lncRNA downstream 9427 61159381 ~ 61160699 (-) False G731287
TU830601 lncRNA downstream 10924 61157931 ~ 61159202 (-) False G731287
TU830611 lncRNA upstream 2608 61173034 ~ 61173261 (-) True G731295
TU830683 lncRNA upstream 117886 61288312 ~ 61288553 (-) True G731360
TU830667 lncRNA upstream 124937 61295363 ~ 61297184 (-) True G731344
TU830688 lncRNA upstream 135894 61306320 ~ 61306549 (-) True G731365
TU830690 lncRNA upstream 139149 61309575 ~ 61310085 (-) True G731367
XM_036985875.1 mRNA downstream 29500 61118100 ~ 61140626 (-) False LOC110530271
XM_036985887.1 mRNA downstream 29538 61118101 ~ 61140588 (-) False LOC110530271
XM_036985888.1 mRNA downstream 29538 61118102 ~ 61140588 (-) False LOC110530271
XM_036985898.1 mRNA downstream 29610 61118102 ~ 61140516 (-) False LOC110530271
XM_036985874.1 mRNA downstream 29667 61118100 ~ 61140459 (-) False LOC110530271
XM_021613195.2 mRNA upstream 14559 61184985 ~ 61189649 (-) False si:dkey-97a13.12
XM_021613196.2 mRNA upstream 14566 61184992 ~ 61189646 (-) True si:dkey-97a13.12
XM_021613197.2 mRNA upstream 19406 61189832 ~ 61200997 (-) True adhfe1
XM_021613198.2 mRNA upstream 51345 61221771 ~ 61233430 (-) True LOC110530276
XM_021611264.2 mRNA upstream 63447 61233873 ~ 61239771 (-) True LOC110529124
TU825771 other downstream 3306249 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 3323437 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 3358704 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 3864600 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 4033013 57136141 ~ 57137113 (-) True G726496
TU831141 other upstream 874609 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 1010261 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 3819875 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 4347741 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 4930670 66101096 ~ 66101627 (-) True G736841

Expression Profile