RNA id: TCONS_00003598


Basic Information

Item Value
RNA id TCONS_00003598
length 875
RNA type mRNA
GC content 0.54
exon number 7
gene id XLOC_001796
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1638876 ~ 1675362 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCATGGGAATGCCTGCTCTGGAGCTCTGCATGGAGCCAGGCGTCAACACCACCCCAGAGGGAACCGATTCTGCGCTCTCTGAGGAGGAACCCGAGATGGACAACTTATTCCCCAAACCAGACTCTCTAGCGGTCACCGGAGACAAGAACGACATCGCCTCACCAGTGTCCTCAATCGGGACCACCTACTCGCAGGAGCTGGTGGACCTCTACACACTCAATCTACACCGCATCGACAAAGACGTCCAGCGATGTGACAGAAACTACTGGTATTTCACCCCAGCCAACCTGGAGAAACTGCGCAACATCATGTGCAGTTATGTGTGGCAGCACCTCGACATCGGATACGTCCAGGGAATGTGTGACTTACTAGCGCCCCTGCTGGTCATCCTGGATGATGAGGCCATGGCCTTCAGCTGCTTCACAGAGCTCATGAAGCGCATGAACCAGAACTTCCCTCACGGAGGAGCCATGGACACACACTTCGCCAACATGCGTTCCCTCATCCAGATCCTGGACTCGGAGCTGTTCGAGCTGATGCAGCAGAATGGAGACTACACACACTTCTACTTCTGCTACCGCTGGTTCCTGCTGGATTTCAAGAGAGAAATGGTGTATGATGACGTGTTCTCCGTGTGGGAGACCATCTGGGCAGCACGTTACGCCTCGTCTGAGCATTTCGTCCTCTTCATCGCGCTGGCCTTGGTGGAGCTGTACCGAGACATCATCCTGGAGAACAACATGGACTTCACAGACATCATCAAGTTCTTTAACGAAATGGCTGAACGTCATGATGTCCCAAAATTGCTGGTTATGGCCCGGGACCTGGTGCACAAAGTCCAGATCCTGATCGAGAACAAGTGAATCCTCCTCCA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-39 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human SGSM1 (small G protein signaling modulator 1).

Ensembl:

ensembl_id ENSDART00000142278

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005803 lncRNA upstream 127374 1538299 ~ 1540732 (+) True XLOC_001794
TCONS_00005667 lncRNA upstream 731064 883086 ~ 937042 (+) True XLOC_001791
TCONS_00005801 lncRNA upstream 778794 859355 ~ 889312 (+) False XLOC_001791
TCONS_00005802 lncRNA upstream 778794 877519 ~ 889312 (+) False XLOC_001791
TCONS_00005666 lncRNA upstream 871865 790225 ~ 796241 (+) True XLOC_001789
TCONS_00005668 lncRNA downstream 22703 1698065 ~ 1713235 (+) True XLOC_001799
TCONS_00005804 lncRNA downstream 28543 1703905 ~ 1712770 (+) False XLOC_001800
TCONS_00005805 lncRNA downstream 32753 1708115 ~ 1712770 (+) True XLOC_001800
TCONS_00005806 lncRNA downstream 228993 1904355 ~ 1921020 (+) True XLOC_001803
TCONS_00005669 lncRNA downstream 291495 1966857 ~ 1991163 (+) False XLOC_001804
TCONS_00003593 mRNA upstream 77003 1590604 ~ 1591103 (+) True XLOC_001795
TCONS_00003592 mRNA upstream 253945 1396940 ~ 1414161 (+) True XLOC_001793
TCONS_00003591 mRNA upstream 560548 1052591 ~ 1107558 (+) True XLOC_001792
TCONS_00003589 mRNA upstream 1076259 589501 ~ 591847 (+) False XLOC_001788
TCONS_00003588 mRNA upstream 1078446 585719 ~ 589660 (+) False XLOC_001788
TCONS_00003599 mRNA downstream 6156 1681518 ~ 1684882 (+) True XLOC_001798
TCONS_00003600 mRNA downstream 174512 1849874 ~ 1892146 (+) False XLOC_001801
TCONS_00003601 mRNA downstream 174512 1849874 ~ 1893095 (+) True XLOC_001801
TCONS_00003602 mRNA downstream 224233 1899595 ~ 1900662 (+) True XLOC_001802
TCONS_00003606 mRNA downstream 556661 2232023 ~ 2393791 (+) False XLOC_001805
TCONS_00003597 other upstream 3068 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 862747 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 1160850 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 1456159 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003605 other downstream 500221 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 1013203 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 1309682 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 1733421 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 2817915 4493277 ~ 4493358 (+) True XLOC_001842

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018713 True 6032 mRNA 0.51 24 CM030135.1 18750445 ~ 18776404 (-)