RNA id: TU831141


Basic Information

Item Value
RNA id TU831141
length 3045
RNA type TUCP
GC content 0.40
exon number 2
gene id G731764
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62045035 ~ 62048119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aactgaaaaattgggcgtgcaaaattattcagcccctttacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgtcatttaaagtttgccacaagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgttaaagcaacacagctcatccctctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgatggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtgcagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaaacgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaaaatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttccttcttcacaagaaaatactgttttttatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcataAGGCACTGTAATTGCTTGTGCGACAACATTTGACtatccttatttacaatgtcatTCATAAACACGATACCTTCCTTGTACATTCTCTCCAAAACAATGTGCCTTTCCTCTATCAGTACATTGGAGTTTAGCCATTTTATTTTCTGTAATATTTGTTACGCCTCTTCTGGAGGATGAAATTGGAATTGGAACCAATTCTTATAGGGCTttaaacagggttccatttacaagcattttgctacactcgcattaacatctgctaaccatgtgtatgtgaccaataacatttgattgtcAAATGGTTTGTTTTAATGGCAAAGAGCCCGCTTTTGAACATTGGATGTGCCTCTCTTAGTAGCCTACTCAAAAACCATTTTGGATATAGATATAATTTTGATATAATGGAGTCTTTAAGTGAGAGGTTTAATGCCTTAATATTAAATAATTTTAACCCTCCAACTCATGTTTGTTTTATAAATATGCCCGTTTTAATGTTTACTGGACATTCCAGTTCCAATTAAATATTACTTTCGACACGACTTGAAAATTGTCTATTGATAGTCTTGCGTCATGTCAGACTTCTATGTTCTCCACAAGGCTGGAGAACGAGATTACTACATGGACAACTAGCACTTGTATGTCTATTTCTTAAAAATCATGAACCAGGAGATTTCCGGAAATAGTGGAATGCATTTTACTTTTGCTTCATCGGCTATTAAAATTGAATAACCTAATAATCTTAGCCAAATGGACACACATAAAGCTACTGTAAATACGTATGCAAGATGCTTTGGTCACAATTAAAGACACTTATTAAACCATGATGTGCACACCTATTTACCCTTCCTTGCAGTAAGACTGTCTAAAGCaatggtgacagacaatgctcaTTAAAATACCCTGTCAAAAGCGTCTTGGCCCTGACCATGAGGAGTTTCAGTAAGCAACTACTGATCAAAGGCCACGTCCTTTGCAGTACAACATTAGAACACATTTATTTCAGATTGATGTTATTATGACAAAGTGTTATGTGCAAGGAGAGTGAGAGACTTGCATATGTGAACTCATCCCCAGGGCACATGAAATGCACTTCTATAGTTTGTGCTGTTGTTTTTTCCTCTATATGTAAAAGAATCTAGCTACATAGCACACAGTAAGAAACAGGTTCATTGCATTTGTTTTGGGAGGCGTGGTCATTTTCTCGGTGGCAAGCAGAAGAAACGTGTAAAAATCCGTTGCACACAAAAATAAATGAACGTTCAAATCATTCTCTTATGTGCAAACAGATGTACATCTTGCATCAATGCCCACTGAAAACCAAACATTTAGGCATTGATGTGCAGTCGCAGGTACATtaatacagatactgtacataaagTAGACTTGGAGTGAACAGAAAATGAAGTGAGAGGTGGATACCCACTATATGTTCGTTTTTTTGCAAACACTTTCACAACATCTATCTACAAAGTGAGTAAGTACTCATGCCAAAACAGAAACATTCTAAGCATGCAGTCTAAAAACATACATATTTTAAATCAACAGCAAAGGCCCAAATTCAATAGGTTACCATCTCTGCACCCTCTCTTAATGACACCAAGTtagcatcccaaattgcaccctattccctattaaagTGCACTATTGTTGACcgggtcaaatgtagtgcacaatAGGGAAAGTTATGCTATTTGGGACATGTCCCAAAaccccatcccccctctctatcccgcCCGGCCGGCGCAGCCAACACAAGGTCAGTTGTGAAGGTggtccacacatacacacagctctcAGGCACCTCGCTGTACATCCACAGGTCAGATGAGTCACCATGATACAGTAAGAAGGGATATGGATATCTTTAAATGGAAAAGCAGTAGCTCAAGAGGAGTATACGTTTCACATGAAAGACAGACAGGGACAATATGCCAGCAGGCCAAAGCAGTAGTTCCTATCCAGAAGCATTGATGTAGAGCTGACTCTGCAGGATGTAGTCGATGACTGGCTGGTTCAGGTAGTCCACTACATGGCCGTCACCATGCTGCAGGGCCAGTCTGAGGGAAGGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU831144 lncRNA downstream 57035 61941991 ~ 61988000 (-) True G731765
TU831090 lncRNA downstream 171119 61870180 ~ 61873916 (-) True G731726
TU830989 lncRNA downstream 173480 61710897 ~ 61871555 (-) True G731629
TU830783 lncRNA downstream 328819 61708834 ~ 61716216 (-) True G731452
TU830851 lncRNA downstream 335257 61532950 ~ 61709778 (-) True G731517
TU831250 lncRNA upstream 91766 62139885 ~ 62142953 (-) True G731861
TU831391 lncRNA upstream 313574 62361693 ~ 62362031 (-) True G731994
TU831438 lncRNA upstream 350120 62398239 ~ 62398459 (-) True G732041
TU831538 lncRNA upstream 422802 62470921 ~ 62471148 (-) True G732140
TU831743 lncRNA upstream 566692 62614811 ~ 62615105 (-) True G732337
XM_021613220.2 mRNA downstream 11042 62004172 ~ 62033993 (-) False LOC110530300
XM_021613222.2 mRNA downstream 11042 62004172 ~ 62033993 (-) False LOC110530300
XM_036985923.1 mRNA downstream 11042 62004172 ~ 62033993 (-) False LOC110530300
XM_036985924.1 mRNA downstream 11042 62004172 ~ 62033993 (-) True LOC110530300
XM_036985921.1 mRNA downstream 11064 62004172 ~ 62033971 (-) False LOC110530300
XM_021613225.2 mRNA upstream 1784 62049903 ~ 62064021 (-) True LOC110530302
XM_021613226.2 mRNA upstream 19878 62067997 ~ 62145625 (-) True LOC110530303
LOC110530961 mRNA upstream 117730 62165849 ~ 62185174 (-) False LOC110530961
XM_036985932.1 mRNA upstream 137623 62185742 ~ 62231420 (-) False LOC110530304
XM_036985933.1 mRNA upstream 137623 62185742 ~ 62235671 (-) False LOC110530304
TU825771 other downstream 4181158 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 4198346 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 4233613 57805388 ~ 57811422 (-) True G726885
TU825404 other downstream 4739509 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 4907922 57136141 ~ 57137113 (-) True G726496
TU831229 other upstream 132568 62180687 ~ 62185180 (-) True LOC110530961
TU835604 other upstream 2942182 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 3470048 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 4052977 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 4145535 66193654 ~ 66209991 (-) False LOC110530385

Expression Profile