RNA id: TU832351



Basic Information


Item Value
RNA id TU832351
length 1109
lncRNA type intronic
GC content 0.42
exon number 2
gene id G732910
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62864614 ~ 62865918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAACTGGAAAAGCCTCCCGCTTCATTTAAGTCTCACAAATGGGAGCATTTTGCCTTCCCGGTCAAATTTTATGATGAAAGAAGGGTTGTGGACAACACCAACACAGTAGGCATTGTGCCACAAGAAGGCCGTATGATCATGGAAAAACATCGAGCATGGCCACATTTTTAAAGTGTCATCACCCTGGAGTGTCAGTGACGGGAGCCAACTCAGCCAAGATACAACTTATTTAAGCAGCCCTTTGCTATAGCCATCACCAAATTTATTGAGATGTTTATCACTGCAGACTTGAGGCCATACTCTGTTGTGGAAAACAAAGGGTTTAAAATTATGGTGAAAGTGCTTGAGCCACGCTCGCGCACCCGATCTTAATGAACAGGAAAATATCAAAATTAAGCACTGAAACTGCACCGTCTGTGTCCATGATCCTACCTCTGAAAACAAGGATTCTACAATCCATGGCACTAGAGATGTCTAACCTAGACCCAGCCCTACGCCGGAGGACAAACAGTGATCTCACAACTGAGATTGTGGCCactgaagagGGTCAAGCCACAGAGCCGAcaggagcagactgagaggcatCTCCTCCACAAAATAATTTGGCCATGAAGGAGCTTTTCGGAGAGACCTTTGCGAGCAAGGACACAGGAAAACGTTTGCCAACACCATCAAAGAGGAGGTGGCATCCTACAAGGCAACAAGCAGCATTCCAATGGATGGTGGTCCACTGGCATAGTGGAAAAGCAATGAGTAAATACCCTCACATTGCCATTGATGGCAAGATGCTACCTGGCTGTGCCTGGCTCTTCAGTACCTAGCGAGAGGGTGTTCTCTATGACAGGGGACATAGTGACTGCAAAGAGGTCTAGACAATGTAGACAAcctcatctttaaaaaaaaatgaatttaagCTCTGCTTTCTTTCTTTACTTTTTTTGATGATGTTGACACAGACAATTTTTTCATTCACTATTGTTCAAAGGAAGACTGTATCATGCGTCATATTGCACTTTAATTTAATTGagaatttaatattttattttaaaatgttatttaaacATTGAAAAGTTCCTTGCTTTAAGTGTTATTTcagtaataaatggaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU831743 lncRNA downstream 249509 62614811 ~ 62615105 (-) True G732337
TU831538 lncRNA downstream 393466 62470921 ~ 62471148 (-) True G732140
TU831438 lncRNA downstream 466155 62398239 ~ 62398459 (-) True G732041
TU831391 lncRNA downstream 502583 62361693 ~ 62362031 (-) True G731994
TU831250 lncRNA downstream 721661 62139885 ~ 62142953 (-) True G731861
TU832444 lncRNA upstream 133314 62999232 ~ 63079193 (-) True G733000
TU832671 lncRNA upstream 326370 63192288 ~ 63192491 (-) True G733215
TU832687 lncRNA upstream 336332 63202250 ~ 63208657 (-) True G733226
TU832729 lncRNA upstream 397836 63263754 ~ 63263967 (-) True G733260
TU832730 lncRNA upstream 398126 63264044 ~ 63264455 (-) True G733261
XM_021613236.2 mRNA downstream 256848 62513304 ~ 62607766 (-) True LOC110530307
XM_021613234.2 mRNA downstream 552121 62299897 ~ 62312493 (-) True LOC110530306
XM_036985938.1 mRNA downstream 552855 62299897 ~ 62311759 (-) False LOC110530306
XM_021613235.2 mRNA downstream 562072 62299897 ~ 62302542 (-) False LOC110530306
XM_036985929.1 mRNA downstream 607926 62192546 ~ 62256688 (-) True LOC110530304
XM_036985949.1 mRNA upstream 17032 62882950 ~ 62967485 (-) True LOC110530309
XM_036985951.1 mRNA upstream 343114 63209032 ~ 63239830 (-) True LOC110530312
XM_021613248.2 mRNA upstream 426525 63292443 ~ 63294703 (-) True LOC110530314
XM_021613250.2 mRNA upstream 609874 63475792 ~ 63494724 (-) False LOC110530317
XM_021613251.2 mRNA upstream 609874 63475792 ~ 63494725 (-) True LOC110530317
TU831229 other downstream 679434 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 816495 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 5000737 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 5017925 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 5053192 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 2124383 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 2652249 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 3235178 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 3327736 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 3693278 66559196 ~ 66560517 (-) True G737449

Expression Profile