RNA id: TU832980



Basic Information


Item Value
RNA id TU832980
length 414
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G733488
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63435458 ~ 63435871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAATCTGTTTTAATGCGAAAGCAGCGTGGCAGTAACTGGGTCTCCGGAGAAGATCTGAGTTTACTCGCGGCGGAGAACGTGTATAACTTGGGGGTAAATCTCCAAAAACACCGGCCCCTGGGACTCTGGGATCCGAGGCCATAGTCCAAACAAGAAAAACAAAGCACAGAGCGaagcgagagagaaacagtgcGAGTTCAGCAAAAGCGACAATAATCCAAGATAGAATACTAGCGCATCCACCCGGTAGAAATTAGGAGAATATATACTAGTCTTTCCTTGAGCCAAAGTCTTGCAACTCCATCCCAACATTATGTGCCCAAATCCGTATAGATCCTTGAGTCTTCATCCGTCCTGATAGCTTATAAAACAACTTTTCGAAGTAAAGTCTGGAGCAGATATTTAAGTCTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU832978 lncRNA downstream 1853 63433138 ~ 63433605 (-) True G733486
TU832773 lncRNA downstream 96426 63338827 ~ 63339032 (-) True G733304
TU832772 lncRNA downstream 97256 63337981 ~ 63338202 (-) True G733303
TU832711 lncRNA downstream 104863 63288684 ~ 63330595 (-) True G733242
TU832714 lncRNA downstream 149083 63285860 ~ 63286375 (-) True G733245
TU832981 lncRNA upstream 1764 63437635 ~ 63437914 (-) True G733489
TU832984 lncRNA upstream 3594 63439465 ~ 63439692 (-) True G733492
TU832988 lncRNA upstream 9424 63445295 ~ 63445510 (-) True G733496
TU832989 lncRNA upstream 11315 63447186 ~ 63447523 (-) True G733497
TU832990 lncRNA upstream 14696 63450567 ~ 63450791 (-) True G733498
XM_021613248.2 mRNA downstream 140755 63292443 ~ 63294703 (-) True LOC110530314
XM_036985951.1 mRNA downstream 195628 63209032 ~ 63239830 (-) True LOC110530312
XM_036985949.1 mRNA downstream 467973 62882950 ~ 62967485 (-) True LOC110530309
XM_021613236.2 mRNA downstream 827692 62513304 ~ 62607766 (-) True LOC110530307
XM_021613234.2 mRNA downstream 1122965 62299897 ~ 62312493 (-) True LOC110530306
XM_021613250.2 mRNA upstream 39921 63475792 ~ 63494724 (-) False LOC110530317
XM_021613251.2 mRNA upstream 39921 63475792 ~ 63494725 (-) True LOC110530317
XM_021613254.2 mRNA upstream 111708 63547579 ~ 63561814 (-) True kiss1ra
XM_021614248.2 mRNA upstream 335812 63771683 ~ 63777609 (-) True LOC110530962
XM_036985956.1 mRNA upstream 366970 63802841 ~ 63837279 (-) False slc6a9
TU831229 other downstream 1250278 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 1387339 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 5571581 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 5588769 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 5624036 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 1554430 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 2082296 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 2665225 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 2757783 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 3123325 66559196 ~ 66560517 (-) True G737449

Expression Profile