RNA id: TU835604


Basic Information

Item Value
RNA id TU835604
length 1464
RNA type TUCP
GC content 0.41
exon number 3
gene id G735880
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64990301 ~ 65040241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attatggggtattttgtgtagatggtgagaaaaaacatatacacttgaagttggaagtttacatttccttaggttggagtcattaaaactagtttttcaaccactccacacattttttgttaacaaactatagttttgttcaagtcgattaggacatcaactttgtgcatgcCACAAGtaattcaacaattgtttacagaaagatgatttcacttacaattcactgtatcacaattccagtggtcagagtttacatacactaagttggctgtgcctttaaagagcttggataattccagaaaatgatgtcatggctttagaagcttctgattggctaattgacatcatttcattcaattggaggtgtacctgggatgtatttcaaggcctacctacaaactcagtgcctctttgcttgacatcatgggaaaatcaaaataaatttgccaaaacctcagaaaaaaagttgtagacatccacagaagtctggttcatccttgggagcaatttccaaacgtctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaccacgcagccatcatgccgttcagagatgaacgtactttggcgtgaaaagtgcaaatcaatcccagaacaacagtaaaggaccccgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacaagtcctatatcgacataacctgaaaggccactcagcaaggaagaagccactgctccaaaaccaccataacaaatccagactacgttttgcaactgcacatgtgcacaaagatcgtactttttggagaaatgtcctctgctctgaagaaacaaaaatagaactggttggccataatgaccattgttatgtttgaaggaaaaagggggaggcttgcaagccgaagaacaccatcccaaccgtgaagcacgagggaggcagcatcatgttgtgggggtgctttgctacaggagggactggtgcacttcacaaaatagatggcatcatgagggaggaaaatgatgtggatatattgaagcaacatctcaaaatattagtcaggaagttaaagcttgttcacaaatgggtcttccaaatgaacaatgaccccaagcatacttccaaagttgtgacaaaatggcttaaggacaacaaagtcaaggtattggagtggccacaaagccctgacctcaatcctataaaaagtgtgtggtcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaacctgacattagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgttgaaggctactcgagatgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttccgacttcaactgtatctagaaTGTCAGTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU835586 lncRNA downstream 23176 64966805 ~ 64967125 (-) True G735863
TU835576 lncRNA downstream 34884 64955134 ~ 64955417 (-) True G735853
TU835572 lncRNA downstream 39327 64950747 ~ 64950974 (-) True G735849
TU835562 lncRNA downstream 47274 64942729 ~ 64943027 (-) True G735839
TU835553 lncRNA downstream 55034 64935036 ~ 64935267 (-) True G735830
TU835701 lncRNA upstream 82741 65122982 ~ 65126162 (-) True G735971
TU835791 lncRNA upstream 210609 65250850 ~ 65251189 (-) True G736049
TU835881 lncRNA upstream 342987 65383228 ~ 65386534 (-) True G736134
TU835942 lncRNA upstream 432252 65472493 ~ 65472965 (-) True G736188
TU835944 lncRNA upstream 434748 65474989 ~ 65475294 (-) True G736190
XM_021613321.2 mRNA downstream 196128 64758400 ~ 64794173 (-) True cdh6
XM_021613320.2 mRNA downstream 196148 64758400 ~ 64794153 (-) False cdh6
XM_021613319.2 mRNA downstream 196154 64758400 ~ 64794147 (-) False cdh6
XM_036985975.1 mRNA downstream 270427 64711467 ~ 64719874 (-) False c8h5orf22
XR_005052932.1 mRNA downstream 270427 64711467 ~ 64719874 (-) True c8h5orf22
XM_036984497.1 mRNA upstream 89733 65129974 ~ 65135673 (-) False cahz
NM_001124221.1 mRNA upstream 89736 65129977 ~ 65135570 (-) True cahz
XM_036985984.1 mRNA upstream 229755 65269996 ~ 65290375 (-) False c8h10orf67
XM_021613330.2 mRNA upstream 229755 65269996 ~ 65290810 (-) False c8h10orf67
XM_021613331.2 mRNA upstream 229755 65269996 ~ 65290810 (-) True c8h10orf67
TU831229 other downstream 2805121 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 2942182 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 7126424 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 7143612 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 7178879 57805388 ~ 57811422 (-) True G726885
TU835971 other upstream 477926 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 1060855 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 1153413 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 1518955 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 1673452 66713693 ~ 66714496 (-) True G737422

Expression Profile