RNA id: TU836115



Basic Information


Item Value
RNA id TU836115
length 605
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G736336
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65703306 ~ 65706490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGGTAGTTCTCTAATTCTGAAGTATGTAACAATTGATAGAGCAGCGGAATAACTCAGTGAGAGTCTTCAGACAAGCTCGCAGCATCACTCTAACGAGAAGTAAATGCTGAATTGAATAGTATGTTAAAACAGAAggcacatagacagacagagaaagaaattGAATGACTTACTTGGTGTAAAAGCAAATCTGTGTTTGCATAACTCGCAGTATTCTTTTCTGCTGTGTTTTAACCATTGTACCAAGCATTCTTGGTGGATGAATTTTATACTTCCTGTGCAAACACATGGGTGATATAGTGGCTTGTCCAGGGTTCCTTCAGACCGGCAGACCCGGCATATATCCCCTTCCTCGGCGGTGTCCATCTTGAATACTGACGCACACTGTCCTCTTTACAGTCAGCACAACACGAAACACCGTCTGACTAGTTGGTGGAATGCCCAGCTGCCAgcgaaataaaataaacataacaTCTCAGAATGATTCGAACACCAACGATCCCCGGAATACAATGTAACCTGTCTATTTGATTCCCCGTTGTGACACAATGAAGCTATTTATTGGGCACACTTCATCATGGCACTACTACTGCTAGAAGGCTAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU836107 lncRNA downstream 10620 65692048 ~ 65692686 (-) True LOC110529129
TU836088 lncRNA downstream 32927 65668287 ~ 65670379 (-) True G736312
TU836086 lncRNA downstream 32971 65668287 ~ 65670335 (-) False G736312
TU836071 lncRNA downstream 56009 65647084 ~ 65647297 (-) True G736298
TU836069 lncRNA downstream 59168 65643355 ~ 65644138 (-) True G736296
TU836154 lncRNA upstream 11925 65718415 ~ 65719985 (-) True G736350
TU836133 lncRNA upstream 31775 65738265 ~ 65741143 (-) True LOC110530368
TU836262 lncRNA upstream 164054 65870544 ~ 65876229 (-) True G736452
TU836286 lncRNA upstream 187329 65893819 ~ 65894323 (-) True LOC110529131
TU836295 lncRNA upstream 189491 65895981 ~ 65896341 (-) True G736469
XM_021611268.2 mRNA downstream 10531 65691486 ~ 65692775 (-) False LOC110529129
XM_021613349.2 mRNA downstream 65319 65608778 ~ 65637987 (-) False LOC110530362
XR_002474514.2 mRNA downstream 65319 65608780 ~ 65637987 (-) False LOC110530362
XM_036985990.1 mRNA downstream 156674 65520250 ~ 65546632 (-) True LOC110530358
XM_021613343.2 mRNA downstream 216830 65483660 ~ 65486476 (-) False shhb
XM_021613363.2 mRNA upstream 31771 65738261 ~ 65850047 (-) False LOC110530368
XM_021613358.2 mRNA upstream 31771 65738261 ~ 65882376 (-) False LOC110530368
XM_021613360.2 mRNA upstream 31771 65738261 ~ 65882376 (-) False LOC110530368
XM_021613361.2 mRNA upstream 31771 65738261 ~ 65882376 (-) False LOC110530368
XM_021613362.2 mRNA upstream 31771 65738261 ~ 65882376 (-) False LOC110530368
TU835971 other downstream 174723 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 663065 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 3518126 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 3655187 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 7839429 57862738 ~ 57863877 (-) True LOC110530228
TU836724 other upstream 394606 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 487164 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 852706 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 1007203 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1674730 67381220 ~ 67381977 (-) True G738472

Expression Profile