RNA id: TU836313


Basic Information

Item Value
RNA id TU836313
length 476
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G736482
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65909116 ~ 65909591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcctgtcttgcaggaaatcacacacagaacgagcagtatggctggtggcattgtcatgctggagggtcatgtcaggatgagcctgcaggaagggtaccacataagggaggaggatttcttccctgtaatgcacagcgttgagatttcctgcaatgacaacaaggtcagtccgatgatgctgtgataccccgccccagaccatgacggaccttccacctccaaatcgatcccgctccagggtACCGGCCTCGGTGTAAtcctcattccttcaacgataaacgtgaatccaaccatcacccctggtgagacaaaaccgcgactcgtcagtgaatagcactttttgcctgtcctgtctggtccagcgacggtggatttgagcccataggcgacgttgttgccggtgatgactggtgaggacctgccttacacagacctacaagccctcagtccagcctctctcagcctattgcggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836312 lncRNA downstream 63 65908252 ~ 65909053 (-) True G736481
TU836297 lncRNA downstream 11000 65897444 ~ 65898116 (-) True G736471
TU836295 lncRNA downstream 12775 65895981 ~ 65896341 (-) True G736469
TU836286 lncRNA downstream 14793 65893819 ~ 65894323 (-) True LOC110529131
TU836262 lncRNA downstream 32887 65870544 ~ 65876229 (-) True G736452
TU836314 lncRNA upstream 92 65909683 ~ 65910893 (-) True G736483
TU836315 lncRNA upstream 1702 65911293 ~ 65911792 (-) True G736484
TU836596 lncRNA upstream 9727 65919318 ~ 65920903 (-) False G736731
TU836597 lncRNA upstream 9727 65919318 ~ 65919574 (-) True G736731
TU836600 lncRNA upstream 15890 65925481 ~ 65925685 (-) True G736733
XM_021611271.2 mRNA downstream 14066 65893969 ~ 65895050 (-) False LOC110529131
XM_021613359.2 mRNA downstream 26737 65738261 ~ 65882379 (-) False LOC110530368
XM_021613357.2 mRNA downstream 26739 65738261 ~ 65882377 (-) False LOC110530368
XM_036986000.1 mRNA upstream 167223 66076814 ~ 66096951 (-) False LOC110530374
XM_036986001.1 mRNA upstream 167223 66076814 ~ 66096951 (-) False LOC110530374
XM_036986002.1 mRNA upstream 167223 66076814 ~ 66096951 (-) False LOC110530374
XM_036986003.1 mRNA upstream 167223 66076814 ~ 66096951 (-) False LOC110530374
XM_036986004.1 mRNA upstream 167223 66076814 ~ 66096951 (-) True LOC110530374
TU835971 other downstream 380533 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 868875 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 3723936 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 3860997 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 8045239 57862738 ~ 57863877 (-) True LOC110530228
TU836724 other upstream 191505 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 284063 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 649605 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 804102 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1471629 67381220 ~ 67381977 (-) True G738472

Expression Profile