RNA id: TU836710


Basic Information

Item Value
RNA id TU836710
length 855
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G736833
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66075644 ~ 66076553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagagagtcaggacacccgtttaacgtcccatccgaaagacggcaccctacacagggcaatgtccccaatcactgccctggggcattgggatattattatttttttagaccagaggaaagagtgcctcctacttgccctccaacaccacttccagcagcatctggtctcccatccagggactgaccaggaccaaccctgcttagcttcagaagcaagccagcagtggtatgcagggtggaaTGCTGCTGGCATATGCAGCCGTTAgtcagataccttaaaagaaatggGCCTCAGCATATCGTcacagtatttctgtgcattcaaattgacatcgataaaatgcagcttgcccaaaccataaccccaccgtcaccatggggcactctgttcacaactttgacatcagcaaaccgctcccccacacgatgccatacacgtggtctgcgattgAGGCTggttgccaaattctctaaaatggcaTTGGAGGCGGCTTAAGATAGAGAAATGAACTTTACATTTTCTGACAACCGCTCTAGTGGACacttctgcagtcagcatgccaattgcatgtgccctcaacttgagacatctgtagcattgtgacaaaacggcacattttagagtggtcttttgtccccagcacaaggtgtacctgtgtaatgatcatgctgtttaatcagctttttgatatgtcacacctAACATGATCCAAGTGGATGGTTTATCTTGGTAAtggacaaatgctcactaacaggaatgtaaaaaaaaattgtgcacaaaatcttgagaaatacactttttgtgtgtatggagcaTTTCAGGGATCTTCTATTTCAGCtcaggaaacatgggac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836701 lncRNA downstream 10302 66064989 ~ 66065397 (-) True G736831
TU836697 lncRNA downstream 14806 66060650 ~ 66060893 (-) True G736827
TU836696 lncRNA downstream 16560 66058894 ~ 66059139 (-) True G736826
TU836693 lncRNA downstream 24533 66050856 ~ 66051166 (-) True G736823
TU836681 lncRNA downstream 41420 66034072 ~ 66034279 (-) True G736814
TU836723 lncRNA upstream 23175 66099728 ~ 66099930 (-) True G736840
TU836739 lncRNA upstream 41219 66117772 ~ 66117974 (-) True G736856
TU836741 lncRNA upstream 43397 66119950 ~ 66120476 (-) True G736858
TU836780 lncRNA upstream 91929 66168482 ~ 66169062 (-) True G736893
TU836774 lncRNA upstream 121675 66198228 ~ 66199927 (-) True G736888
XM_021611271.2 mRNA downstream 180649 65893969 ~ 65895050 (-) False LOC110529131
XM_021613359.2 mRNA downstream 193320 65738261 ~ 65882379 (-) False LOC110530368
XM_021613357.2 mRNA downstream 193322 65738261 ~ 65882377 (-) False LOC110530368
XM_036986000.1 mRNA upstream 261 66076814 ~ 66096951 (-) False LOC110530374
XM_036986001.1 mRNA upstream 261 66076814 ~ 66096951 (-) False LOC110530374
XM_036986002.1 mRNA upstream 261 66076814 ~ 66096951 (-) False LOC110530374
XM_036986003.1 mRNA upstream 261 66076814 ~ 66096951 (-) False LOC110530374
XM_036986004.1 mRNA upstream 261 66076814 ~ 66096951 (-) True LOC110530374
TU835971 other downstream 547116 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1035458 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 3890519 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 4027580 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 8211822 57862738 ~ 57863877 (-) True LOC110530228
TU836724 other upstream 24543 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 117101 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 482643 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 637140 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1304667 67381220 ~ 67381977 (-) True G738472

Expression Profile