RNA id: TU836774


Basic Information

Item Value
RNA id TU836774
length 1658
lncRNA type read_through
GC content 0.38
exon number 2
gene id G736888
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66198228 ~ 66199927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgagtttgatgctgactcacctggggtgaccgagaagtgTTCTGCCTGCCCTCTCAACTCCCAGACGggctcctccagcaccggtcgggccgtgtgtcctctccgaccacagctggtgcaggaggagcctcctcctccggtacccctcgaaGCGGCCCCCCCTAACTCCATAGGAATGGGAGCGGGAGGGCTAGGAGGTGGAACTGACAGGGAACATAGCACTATTCTTTGACACTCATAAAACTAATGGAAGAAAGTAGGTGCTTAACGAAGTGATTTTTTTATTGACATTCGTTAACAGTATATTTGCTTGAATTGAAAGCGCAGCCTGAGAATTACTGAGCCCAACAGACAACCAAAGAATACTGTCGGGCCAAGAAAATCAAGGAGGACATAGTGGGGACAGACAGTGAAACATATATACCTCAGAGGGTTTCTGAGAACAAAATAATGGTTTTAAAACGTTCACTAGCTGCCATCTCTTAAAGAGGAAATATCATGTGAGATATTTTCAAAATAGGCAACAGATTGATGTTTGAAAATTGCATTGCTTGATCTTCAACCACACAAAATGTGCATAGCATGAGACACATTTTCAACAGTAACTTAAACATACTGCATAAAAACATAgtgtagaaaataaataaataaaaatacatgaatAACTCCCTTCAATCttgtactgtatatctgacagtTTGTCATTTCAAAATGATTTCAGGAACATATTACTGAGTATATTAGAAATTGTTATACATTTCCTGTATATCTTACAGCCTTTCAATTTTATAATAGCAACTGTAAATGCACTCACTATACATTCCAGAATCTTAGTTGTCCAAGGAAAGGAACACGAGATAAAGTGAACAGATTGGATCAGAAACATAGGTCATGTAAGTACAGTAGTGTTTAATGTAAGTTTCTGGTGTCTCTCTTCTAATATCAAACTACTATAACGATGCACATGAGAAGATGGGACATATACAATTAATGAATTGGTCTGCAATCAACTCAGTTATAGGCTTATGTCTGTGTGACAGTGGCATGCTGTCATATACAGTGTTTTCATGTTAAGGCATGGCATTTGCAGACTATAACAGCTGTCATATCCTATTGTGATAAAGTCGCGATAGCATATGTGCATTAAATGTCAACACGAATGTAAATTAATAAAGCAACCCTGTGGGGTCTGTCCTAAAGGATGTGGCATGGCAACCTGGAACGGACAAAAGACACTCCAACATGACGTCCATTTTGAGTCAATTACATTTTCATCATGTCATAGCACATATGGCTGTGGGCAAGGGTAGACATACAGGCATACACTGAAACAAAAGCAAACATGTTAACTCTGCTAAAACACAAGCGGTAACAGGTCAACAGCATTGTATGCTACTGTATTTATTTCAGCAAAAACTATATTTGCAAGTGATGTTAGATTTAAAAATATAATTGATTTTTGTTTGAATAGTGGTATACCTATTTCAGGTGAGTTTACTAAGTGTTAACTCCTTACAAGTGCAACAATTATTCAGGAAGAATAAGATCCAGtacaatctaaacacaatacccgcAAATTTACTTCAAATCATCTCTCTCTTGGTGTTTGAAAATGATAACAAAAAACTTCAATATCTCCTGTTGTGTTTTCCATGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836780 lncRNA downstream 29166 66168482 ~ 66169062 (-) True G736893
TU836741 lncRNA downstream 77752 66119950 ~ 66120476 (-) True G736858
TU836739 lncRNA downstream 80254 66117772 ~ 66117974 (-) True G736856
TU836723 lncRNA downstream 98298 66099728 ~ 66099930 (-) True G736840
TU836711 lncRNA downstream 121675 66075644 ~ 66076553 (-) False G736833
TU836772 lncRNA upstream 4377 66204304 ~ 66209991 (-) True LOC110530385
TU836802 lncRNA upstream 7494 66207421 ~ 66207711 (-) True G736915
TU836805 lncRNA upstream 19480 66219407 ~ 66219822 (-) True G736918
TU836842 lncRNA upstream 61354 66261281 ~ 66261602 (-) True G736950
TU836843 lncRNA upstream 62526 66262453 ~ 66262663 (-) True G736951
XM_036986000.1 mRNA downstream 101277 66076814 ~ 66096951 (-) False LOC110530374
XM_021613383.2 mRNA upstream 4508 66204435 ~ 66210028 (-) False LOC110530385
XM_021613388.2 mRNA upstream 73861 66273788 ~ 66332260 (-) False LOC110530388
XM_036986007.1 mRNA upstream 73861 66273788 ~ 66332261 (-) True LOC110530388
XM_021613393.2 mRNA upstream 138343 66338270 ~ 66365785 (-) False LOC110530389
XM_021613390.2 mRNA upstream 138343 66338270 ~ 66365787 (-) False LOC110530389
TU836724 other downstream 96601 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 669645 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1157987 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 4013048 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 4150109 62045035 ~ 62048119 (-) False G731764
TU837419 other upstream 359269 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 513766 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1181293 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 1220812 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 1223936 67423863 ~ 67425339 (-) False G738504

Expression Profile