RNA id: TU837392


Basic Information

Item Value
RNA id TU837392
length 1196
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id G737426
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66518495 ~ 66596241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAAATGTTTGCTTGTCTTTTATTTCATGATTAATATTCACATCACTAGATAACAATTAATCACAATGAACATCTCTTTCATACCAAATTACATCTCAAATCGAAGGGGAAACAATGAACTCCTATCTATGACAGATGTCTACAATCCATTGTCTTCTGCATGCTCTTATGGTGTGCACTATGGAGAATAATACACACTGCAGGTGTGCTCTAAGACGAAGCACAGCTATGGGCTCCTTGATGCTTTACAGAAGCACACTACATAACACATGCCAAAAGACAGTTACTGTTAGTCTCACATGGGGGATGTGGGAGGGATGTCTGGATGACAATCAAGGGCTGTGTGTGTCAGGTGCTGCATTTGGGAGCATGGCCTTCAACCTATCCTCACAATGCCTGGTTCCTGATTAAAGTTGGGCACTCGGTCAGCTCACCAGTGACACAAAACATTTGGAAGAATAAGTATGAAACCGGATTATTCTTTATTCCATGTAGATTTCTAACATATAGTGAGTACAGGCCTAAGTGTAAGAGGCAGATAAAAGTGTTAATTTATTCCTCTACAGAGTTGGAGTTGGTAATAACACACCTTGACCAACCATTGAGATGCTAACCACCATTCCTACTGTCAAGTCAAATGTagatttagggctctattcaatcagaggcgctttagccgacatccgcatagtgtctgagTGAGATTTGAGAAAGACCACAGGGTGTTTGTTGAGGCAAGAGGCACCTACTTGTCTCAGGGATGCGTTTGTCCATGCCCATGCCTATCGGGTCTCGCAGCCCATCACCCCCAAAGGGATTAGGGTGAGGTGTGGCCTCCTTATGTCCGTTCTCCTTAGCCATACTTCTTGCACCTGTGGCTGGAGCTCCACCAGGGGGAGATGTTTTCCCCTCAGCTTTCTCCTGCATCCCCCCAGCCTTGTTTTGTACATCCTCTGCCTCAAGGCCAATATTGTCCATTGACCCCACCTTGGGCTTGCCATTACCATTGGCCTTAGCCTCAATCTTCACATCGCCACCCCCTGGCTTGTGCTTGATGTTGTCCTTAGAGCCACACTTGGAGGTCACTTTGCTCAAGTCCACCTTCTTATGCTGAATCTGGACCTGAATGCATCCaaacaaacaatacaaatgtTGAAGTATGAATGGCAAAGGTGAAACAACACCCACTCTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU837364 lncRNA downstream 39019 66541830 ~ 66551319 (-) True G737411
TU837358 lncRNA downstream 83262 66506875 ~ 66507076 (-) True G737407
TU837357 lncRNA downstream 85000 66505064 ~ 66505338 (-) True G737406
TU837356 lncRNA downstream 85851 66504262 ~ 66504487 (-) True G737405
TU837355 lncRNA downstream 86629 66503482 ~ 66503709 (-) True G737404
TU837434 lncRNA upstream 2026 66598267 ~ 66598698 (-) True G737462
TU837438 lncRNA upstream 6699 66602940 ~ 66603157 (-) True G737466
TU837443 lncRNA upstream 20620 66616861 ~ 66617269 (-) True G737471
TU837444 lncRNA upstream 23220 66619461 ~ 66619772 (-) True G737472
TU837386 lncRNA upstream 51909 66648150 ~ 66648459 (-) True G737421
XM_021613396.2 mRNA downstream 156613 66390204 ~ 66433725 (-) True LOC110530391
XM_021613395.2 mRNA downstream 156614 66390204 ~ 66433724 (-) False LOC110530391
XM_021613399.2 mRNA downstream 156614 66390204 ~ 66433724 (-) False LOC110530391
XM_021613397.2 mRNA downstream 172331 66390204 ~ 66418007 (-) False LOC110530391
XM_021613394.2 mRNA downstream 208608 66338270 ~ 66381730 (-) True LOC110530389
LOC118965631 mRNA upstream 14062 66610303 ~ 66618598 (-) True LOC118965631
LOC110530964 mRNA upstream 27272 66623513 ~ 66632180 (-) True LOC110530964
LOC118936436 mRNA upstream 37684 66633925 ~ 66636934 (-) True LOC118936436
XM_021613409.2 mRNA upstream 53622 66649863 ~ 66658816 (-) True LOC110530394
XM_021613411.2 mRNA upstream 76219 66672460 ~ 66682940 (-) False elovl1a
TU837419 other downstream 29821 66559196 ~ 66560517 (-) True G737449
TU836773 other downstream 380347 66193654 ~ 66209991 (-) False LOC110530385
TU836724 other downstream 488711 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 1061755 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1550097 64990301 ~ 65040241 (-) True G735880
TU837387 other upstream 117452 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 784979 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 824498 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 827622 67423863 ~ 67425339 (-) False G738504
TU840819 other upstream 2554102 69150343 ~ 69157726 (-) True igfbp1

Expression Profile