RNA id: TU837419


Basic Information

Item Value
RNA id TU837419
length 1298
RNA type TUCP
GC content 0.57
exon number 2
gene id G737449
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66559196 ~ 66560517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATAGATATGTCCCCTCTTCAGTGTCACCAACCTTCCAGCAGGGGGGGCTCTGGCAGCGGTGGCTCCTGGTGCTCTGTGAGTGGCAGTGTAGTGGGGATAAAGGGCGGGGCTGCAGGGTTGAGGCCTGAGCACACTGCAGGGCAGGGACTGTGAGTGTCATGATCAGGCTGGGAGGAGTGGCTAAGCAGTGGAGGAGAAGTGCActggaaagaggaggaggtggtggtgtttgGAGGAAGGCCCTGGGGTGTGGTGGTCTGAGACAGGGCCTGTGGCTGTGAAAAAGGGGTGCTGGCTGAGGGGGTTTGCAGGACAGAGTCTAGGAAAGAGGTCTGTGAGACCTGGGGGCTGAAGCCTGGGGAACTCTTAGGACCCAGTTGCCTCTGGTCAGTAATAGATGCGTTGGCCTCACGACTACAATGATCAGAGGAGGCTTTGTCAGTGAAGGACATAGCTGCCTCCTCCTTCTTGGGGGGTAGGACATCTTTAGTGGCTAAGGGAGGGGGCATTTTGAAGTCATCAATACACATGGGTTCATAATGGAGGGGAGCAGAGGCAGTGTTTTTAACAGGAGCCTCAGCCTCCCACTCCATGTTTACCTTGGCTGGAGAAGGTTGCTCAAACATGTTCAAGTTACTAGTGGAAGTGTCTGTTAAGGCAGGGTCCTTGTTGAGGATGTGACTTGGTTTGGGGTTCTCAGTGAGTGGCGGCGAATTGGAGGTGTGAGAGGGTTTGGTGTCCTCTATAAAACTGCTAAAGGGGTTAGTCTGGGGGTCAGCTATGAGGGAGGAGATGTTCTCTAGGGTTGAGCTTAACGGACCGGAGGCCATCACCATTGCAGACACAGAGGCTGGGGTGGCATGGGGTGTCGTGGGCTCCTGGGGTGTTGGCCCCCACTCCTCTGGCAGCTTCATCCTGCTCTTATTCTTCCTGCCCCTGAccctaccccctcccctccctcggaTCTCACACTCCCAGCTCTCCTCCTTGCTCGGGGAGGACAGACTCAGCGGGCAGTCCGAGGCTCcgctctctgtctcgccctcctcctcctccttcgaGGAGTCCGGAGCCTCTTCCCTGTCCATGAAGTCATACAGCTCCTCTCTGGGCCtccttttctttttctttctcttctgCTGCATGCTGCCGCTGTCGACCCCCTCAGTCTCCTGGCCGTGGGGGCTGAGGGGGTCGGAGTTGGGGCTCTCCTCCACTGAATCGCTGGGGGAGAGACTGAGACCCTCTGAGGCTTGCAGCCTGGACTCACCATCTGCCAAGGGGTTtgggtttgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU837364 lncRNA downstream 7877 66541830 ~ 66551319 (-) True G737411
TU837358 lncRNA downstream 52120 66506875 ~ 66507076 (-) True G737407
TU837357 lncRNA downstream 53858 66505064 ~ 66505338 (-) True G737406
TU837356 lncRNA downstream 54709 66504262 ~ 66504487 (-) True G737405
TU837355 lncRNA downstream 55487 66503482 ~ 66503709 (-) True G737404
TU837391 lncRNA upstream 27655 66588172 ~ 66596241 (-) False G737426
TU837392 lncRNA upstream 29821 66590338 ~ 66596241 (-) True G737426
TU837434 lncRNA upstream 37750 66598267 ~ 66598698 (-) True G737462
TU837438 lncRNA upstream 42423 66602940 ~ 66603157 (-) True G737466
TU837443 lncRNA upstream 56344 66616861 ~ 66617269 (-) True G737471
XM_021613396.2 mRNA downstream 125471 66390204 ~ 66433725 (-) True LOC110530391
XM_021613395.2 mRNA downstream 125472 66390204 ~ 66433724 (-) False LOC110530391
XM_021613399.2 mRNA downstream 125472 66390204 ~ 66433724 (-) False LOC110530391
XM_021613397.2 mRNA downstream 141189 66390204 ~ 66418007 (-) False LOC110530391
XM_021613394.2 mRNA downstream 177466 66338270 ~ 66381730 (-) True LOC110530389
LOC118965631 mRNA upstream 49786 66610303 ~ 66618598 (-) True LOC118965631
LOC110530964 mRNA upstream 62996 66623513 ~ 66632180 (-) True LOC110530964
LOC118936436 mRNA upstream 73408 66633925 ~ 66636934 (-) True LOC118936436
XM_021613409.2 mRNA upstream 89346 66649863 ~ 66658816 (-) True LOC110530394
XM_021613411.2 mRNA upstream 111943 66672460 ~ 66682940 (-) False elovl1a
TU836773 other downstream 349205 66193654 ~ 66209991 (-) False LOC110530385
TU836724 other downstream 457569 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 1030613 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1518955 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 4374016 62180687 ~ 62185180 (-) True LOC110530961
TU837387 other upstream 153176 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 820703 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 860222 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 863346 67423863 ~ 67425339 (-) False G738504
TU840819 other upstream 2589826 69150343 ~ 69157726 (-) True igfbp1

Expression Profile