RNA id: TU837478


Basic Information

Item Value
RNA id TU837478
length 533
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G737503
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66687091 ~ 66687623 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctgtatatagtgccacgtcgtatgctccctccaacgagttgccttggaaacaaaacacgtccttcaccgtcagctttagaatccccatcaatattatccttccaaaagattcccgtcctaaaggctccatctccttttccttccaagcaaacctaatcgtgttagccagcccaatcccagggaccgaccgtgttgatgtatttagcaccatctccgcaaggagaatggcgctcgttctcttctcttctcttccaaaaCAAGTGAAAAGAAAAAACCAAAGTGACTGCGCCTATCTgttgcaaacaaacacagagacaggaacaatcacccacgaaacactcaaagaatatggctgcctaaatatggttcccaatcagagacaacgataaacacctgcctctgattgagaaccactctaggcaaccatagacttacctagacaactctactataccacaatcccataacctacaaaaaccccaagacaaaacacaccacgtaAATAacacatgtcacaccctggcctgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU837386 lncRNA downstream 38632 66648150 ~ 66648459 (-) True G737421
TU837444 lncRNA downstream 67319 66619461 ~ 66619772 (-) True G737472
TU837443 lncRNA downstream 69822 66616861 ~ 66617269 (-) True G737471
TU837438 lncRNA downstream 83934 66602940 ~ 66603157 (-) True G737466
TU837434 lncRNA downstream 88393 66598267 ~ 66598698 (-) True G737462
TU837479 lncRNA upstream 6306 66693929 ~ 66694168 (-) True G737504
TU837490 lncRNA upstream 19065 66706688 ~ 66707910 (-) False G737512
TU837487 lncRNA upstream 19415 66707038 ~ 66707854 (-) False G737512
TU837489 lncRNA upstream 19415 66707038 ~ 66707910 (-) True G737512
TU837384 lncRNA upstream 33159 66720782 ~ 66723020 (-) True G737419
XM_021613410.2 mRNA downstream 4144 66672460 ~ 66682947 (-) True elovl1a
XM_021613411.2 mRNA downstream 4151 66672460 ~ 66682940 (-) False elovl1a
XM_021613412.2 mRNA downstream 4151 66672460 ~ 66682940 (-) False elovl1a
XM_021613409.2 mRNA downstream 28275 66649863 ~ 66658816 (-) True LOC110530394
LOC118936436 mRNA downstream 50157 66633925 ~ 66636934 (-) True LOC118936436
NM_001124314.1 mRNA upstream 110920 66798543 ~ 66801779 (-) True gs02
XM_036986028.1 mRNA upstream 367535 67055158 ~ 67126011 (-) False LOC110530968
XM_036986027.1 mRNA upstream 367535 67055158 ~ 67176150 (-) False LOC110530968
XR_005052935.1 mRNA upstream 368748 67056371 ~ 67176168 (-) True LOC110530968
XM_021613428.2 mRNA upstream 790369 67477992 ~ 67528795 (-) False LOC110530404
TU837419 other downstream 126574 66559196 ~ 66560517 (-) True G737449
TU836773 other downstream 477100 66193654 ~ 66209991 (-) False LOC110530385
TU836724 other downstream 585464 66101096 ~ 66101627 (-) True G736841
TU835971 other downstream 1158508 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1646850 64990301 ~ 65040241 (-) True G735880
TU837387 other upstream 26070 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 693597 67381220 ~ 67381977 (-) True G738472
TU838577 other upstream 733116 67420739 ~ 67421056 (-) True G738502
TU838580 other upstream 736240 67423863 ~ 67425339 (-) False G738504
TU840819 other upstream 2462720 69150343 ~ 69157726 (-) True igfbp1

Expression Profile