RNA id: TCONS_00005804


Basic Information

Item Value
RNA id TCONS_00005804
length 4405
lncRNA type antisense_over
GC content 0.39
exon number 5
gene id XLOC_001800
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1703905 ~ 1712770 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tactattgtttgatcagtgaagcagtgtcgtgtgtaaataaggtctagctgattacctgatttgtgggtagcagaagtaggtgctctttttagCGATGAGCATGCATATTTATTCAACTACAGCATAAGTTGCAAAAATGACATGAACCACCAGTACATCTTCATATAGATGACCAGGCCGGACTTCATGTGTTGTACACCAATCATACACAATTGTTACAGAATAATTCAACATACTAAAAGCTATTCACTGGCTATTTACAACACAGTAGGCAATACCTAATctatggaggaaaaaaaaaaaaaaaacgcaaggaGAATTATTCAGATCAGAAACCAAAAAGAGAAAGAAGGAAGAGCCGAGAGCATGCAGTCGATATGCCGTAAAGCACTAAGGAAAGACTAGAGCAAGCTGGGACGGTTCCCATTGTAgtggaaataaacaataaatggaAGACTACGAAACTAATGTGGGCTTTCCAGTTGGTCTTTGAATTAGGACTGTTAAATGTGAACTGGAAGCAAAGACAAAACTGCAAATACCAAGTGACGATATCATGCTACTTAAATTAaacgaacaaataaacaataaacagagCGCTTTAGGCGTTTAACTCGTTTAGAAAACCAGTtgctatagatgtcaatggtttgTTTATTCTTCGATGCTACATTTTTTTGCGGTAGAAAATACATCGGAGGACCCGGTGTCGCTAAACGGatgattgtttcttttttttaatgcgtaTTAAGACATTCCCAGCTGGTGTAGGAAACAGCTGATGAGAAATCTGCCCTGGTTTATATACACTACATAGACCGCCGTCGCTCTGGGGCCGTGCGCAGCGGAATACAACAGCAATCACAGACGTCCTTCGTGTTTTTGCAGCGATGTTTCATGTATCTGAAAGCGTCCTCGATGTATTTAAGGAACGAAAATCATGAACTTCGCTCCCGCTTTTGTATGCATGAGATCTACTATAGACCGAGTTCGCTAAATCCCGAAGTGACTAGTGCCAGGAACTGTAACTACTCCTTGAATTAAACCTTTAGATTAAAGGGTAAATAGTGTTATTAATTGCAGTTTTGTGATTGCTCCGACCGTCTTGGATTTCTGAGTTTCGCAAATAATCATCTTTGAGGAAAACGTTTGGGTCACAATTTACAGTTTTCATTAGGTAATGGATTTACTCATGATCAATACTAGTGTTACAGTATTTAATGAAGGTGCAGTGTGTACGTTTGACACTCAGTGCAAGCCTAGTTAACAAACTTCAATCATTCAGCATCTACATATAGTAATGTTAAAGGATTAATATGTATTCATTCGATTATAAACCTTGCTATCTCGTTGGAGTGCagcgagtgcactattctgtgcttctgaatagctgtatttaaatgtttctacaATGTTTTATCTGGTGAAAACCGCCAAATTGCCTGTTGTTAGGgaacggggttacaatgtaacctgctgatttaatgtttacttttgtaATAACTATATTAACGCTAATAAATAACCTCAAGTGGAACCctgaatctgcttctcatttcCGAGAGTTTAGTGTCCATCGGAGGTTGTATTTAAGCCCTGATGACTGAATGAacgaaatatgctgttttccatcaAGGTAACCCgggctgctgaaatataattggctaaactggcattgggcgggtaaATCAACCAAAACGAAGGCAGACGTTCCACCACGTAACGCACATTTCCAAAGCTAATCAtgtttcttagggtgctttcacacctagattaGTCTCGTTTGCCctgttagcgcggttcgtttgtgatatgtgaatccagcaactGCGCTTGGATCCGCGCCTAAACAATCGCCTGAATGAGGaggtctcagctcgattgaaacgaactccgGAGTGGATTGATTGTTGTGAGAAAGTGATACGATTcaagcccggctatatcacagtggtTTATGGATTTGTAAGaggcatatggctatatgaagagagagttatgagtagggcgggaggtcattccagacatcccaagtctcctggaattTCCGTTAGTCTCCCACAAATGCAGAGACCCCCGGATacccgcaaacaagtgataatctcaTGGAAATTGCGAGTTTTAGCTGTTTTAGCTATTTGGGTTCGTTTaaaaactttgccgtgtgaaaatGAACCGCActaagaacaaagagcaacaatgtgacgcttttaatccctgtttcggaacaaatgaatcgattaacaggtgtaaaagcaccttaaatatctgcaaacatattaaggtatttttacgctttaaaagagtcaaaaacgtacatacagcaccttcaaTATTAGTTCAACTTTCACTTTTAGTTAATATACTGCTAGTTAACAAGAGCCAACAATGAACGactttaactaattaataaatactgtaacgcATTGACTGCTGTTTGTTCGTGTTAGTAAAttagcattaactaatgcaacccaactgtaaagtgttaccctttgtctttttttttaatttaaagtaaagaAACGAAAACGAAACGCCAACTCTTCAACAAATCAGTTTTTGTCTGTCCAATGAGAAagccacacagaaacaacaaggGGGGAATAAAGTCGATCCGATCCGAATTACGACAACCAGACAACAAAGAACCAACAACCTCCTTTTCCGAAcatgaaaatataaaacaaaacccaTCTGAGCTTCCTTACCAAGGAGCAGATTAAAGTCCAAAATAGCACCATTCATCAGTGTCTCAAATCCGTGGCAGCATCTCAGTCACTTACCACAAGGAAACAATGCGTCTGTACAGCTATTTCTATAGCACAACGTACATGATTACACTTTAATATACTGGCAAAGCAAACAAAAACGATCAAAATTAAAAAGCTAAACTGAAGCGAAAACCTACAAAAATCAACCAATCGAAAAAAGATGAACTCTGTAGCTTTAAGTTTTTAGTAACCGCATGAGAAGTGGGGACTCTTAGCCTTAGTAAATACTGTAAGGTGTGAGTTTTGACTGATGGCGATGTGTTTTAGTGATGAAAACGACGTAAGAATGGAGGATCTAGGAGGGACCTCAAAGTGCTTGAGTCAGTGTGCCTTATTTGGTAGTGAAAGACCACCATGTTTGGCAATGACTTGGTAATGGTCACCAGTCGATAACCACATGATCAATTAACATTAAGGTGCGAGTTTTGATTTCAAATACTTCTTAGAGATTTCAACTAAACAAAAAtggcaacaaaaacaacattcaATACTGCAGGGTTCCCACAGaacttaaagtctgtgtgaaatggaaatttaatttgtttattttcctaggtgtgcaataaaaaaactgtttgttttctGATCGTAGTGTTGTCATTATACTAGAATTCAATAACGATCATTAATGGAATTTTAAAACGTCTATTTAATTCGAGCGCTGTTgagcagaaatgaacacaatggcaaatcagcactgctTAAGAtcatcagcactgtttaagatcatcagcactgtttaaggtcaacatttttaaaatatcagtacaggtattgaattccagtatcgcaatatctgaccatttgcttctgcgttTTGATTGGCGGTTCTTTTGTTGACATCACTTTGacgcatacctgccaacatttgtggTGGGGGGAGGTGAGGGGGTCTATTTCggggagacagaacaatacgggagatgggtctgaaatactggAGACTACCGGGGAAAACgggaatgttggcaggtatgctttgACGCTTCAGAAATGAAATTCTTAGCCACATCTCTTTTAGAgttagtttgctacaagggaaTTGTATGCAAAAAtgaagccccgccccctactctatattccatttcagttggaagtacatcaacattctgaaatgaagccccgccccctactcaatattccatttcagttggaagtacatcaacattctGAAATAAAGCTCCGCCCCCAACTCAATACTCCATTTCAATTGGAAGTACatcaacacactgaaataaaggTCCACCACCTGCTCAATACTCCATTTCAATTGGAAGTACGTTCTGAaacaaagccccgccccctacttaatactCCATTTCaattgaaagtacatcaacacaatgaaataaagccccgccccccactctatattccatttcagttggaggTACATCAACATTCTGAAATAAAGCTCCACCCCCTACTccatattcagtttcagttggaaatgcATCAACACACTGAGATGAAAGTTTCTGTACTTCTACTTTCTAATTCACGTGGACTTCGGCAttgatttaatacaatttttttttgtatttgaaacAAATCTAGCGTCACGCTGATTAAATAACTGAGAGCAGCACAAACTCAGAAAGAAAAGCTCCCAATCAAGTGCACTTTTCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005803 lncRNA upstream 163173 1538299 ~ 1540732 (+) True XLOC_001794
TCONS_00005667 lncRNA upstream 766863 883086 ~ 937042 (+) True XLOC_001791
TCONS_00005801 lncRNA upstream 814593 859355 ~ 889312 (+) False XLOC_001791
TCONS_00005802 lncRNA upstream 814593 877519 ~ 889312 (+) False XLOC_001791
TCONS_00005666 lncRNA upstream 907664 790225 ~ 796241 (+) True XLOC_001789
TCONS_00005806 lncRNA downstream 191585 1904355 ~ 1921020 (+) True XLOC_001803
TCONS_00005669 lncRNA downstream 254087 1966857 ~ 1991163 (+) False XLOC_001804
TCONS_00003604 lncRNA downstream 269780 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00003603 lncRNA downstream 269780 1982550 ~ 1991468 (+) True XLOC_001804
TCONS_00005807 lncRNA downstream 689538 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003599 mRNA upstream 19023 1681518 ~ 1684882 (+) True XLOC_001798
TCONS_00003598 mRNA upstream 28543 1668106 ~ 1675362 (+) True XLOC_001796
TCONS_00003596 mRNA upstream 28554 1638876 ~ 1675351 (+) False XLOC_001796
TCONS_00003600 mRNA downstream 137104 1849874 ~ 1892146 (+) False XLOC_001801
TCONS_00003601 mRNA downstream 137104 1849874 ~ 1893095 (+) True XLOC_001801
TCONS_00003602 mRNA downstream 186825 1899595 ~ 1900662 (+) True XLOC_001802
TCONS_00003606 mRNA downstream 519253 2232023 ~ 2393791 (+) False XLOC_001805
TCONS_00003607 mRNA downstream 521513 2234283 ~ 2393791 (+) True XLOC_001805
TCONS_00003597 other upstream 38867 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 898546 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 1196649 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 1491958 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003605 other downstream 462813 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 975795 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 1272274 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 1696013 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 2780507 4493277 ~ 4493358 (+) True XLOC_001842

Expression Profile

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