RNA id: TU838579


Basic Information

Item Value
RNA id TU838579
length 522
lncRNA type antisense_over
GC content 0.63
exon number 1
gene id G738504
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67423863 ~ 67425339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGTTGAGGTGCACCCACACGTCCAGGTCCAGGCTGAGGAGTCGGGCAGGGCCATCGGTGACTCCGTCCCCCAGCTGGTGACAGAAGCAGCAGCGGCGCTGGTCCCTGAGACTGGCCCCGGGGCGGAGAGACGCTCCCAGCTTCCTCAGCAGCTCATCTATCTGGTCCTCATCAGGGAGCTGGGAGCTTCCTCTGGGCACCACCACCTGCACTGTCCACTTCCTCCAATGGAGACCCTTGTGTCTCTTCCCCTGGTGCCAGCCCTCCTGTTGAGCCCTGGGGCCCCGCGCCTTCAGCTTCACCGTCACTTTGATGGTGTCTGACTTGGCCTCTGTCTTAGGGGTCTTTGGGGTGTCACTGGCTGGGGGGAAGGGGATgggtggggtggagggaggggactGCTTGAGCTGGAGCTGGGCCAGACAGTGGACATCCAGAGAGGACATGTTGTTGCTGTACTGGTGGAGGGCTTTCGACAGGCTCACTTTCTGGTCCGAGTCTGGAGACAGGAGGGCTACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838578 lncRNA downstream 1119 67423242 ~ 67423699 (-) True G738503
TU838570 lncRNA downstream 11973 67412322 ~ 67412845 (-) True G738495
TU838566 lncRNA downstream 15565 67408810 ~ 67409253 (-) True G738491
TU838564 lncRNA downstream 17573 67406714 ~ 67407245 (-) True G738489
TU838559 lncRNA downstream 23510 67401015 ~ 67401308 (-) True G738485
TU838583 lncRNA upstream 1627 67426966 ~ 67427322 (-) True G738506
TU838586 lncRNA upstream 2885 67428224 ~ 67428978 (-) True G738508
TU838584 lncRNA upstream 3927 67429266 ~ 67429919 (-) False G738507
TU838585 lncRNA upstream 4170 67429509 ~ 67430037 (-) True G738507
TU838663 lncRNA upstream 68676 67494015 ~ 67494521 (-) True G738562
XR_005052935.1 mRNA downstream 248650 67056371 ~ 67176168 (-) True LOC110530968
XM_036986027.1 mRNA downstream 248668 67055158 ~ 67176150 (-) False LOC110530968
XM_036986028.1 mRNA downstream 298807 67055158 ~ 67126011 (-) False LOC110530968
NM_001124314.1 mRNA downstream 623039 66798543 ~ 66801779 (-) True gs02
XM_021613410.2 mRNA downstream 741871 66672460 ~ 66682947 (-) True elovl1a
XM_021613428.2 mRNA upstream 52653 67477992 ~ 67528795 (-) False LOC110530404
XM_036986041.1 mRNA upstream 89737 67515076 ~ 67528795 (-) True LOC110530404
XM_036986042.1 mRNA upstream 104466 67529805 ~ 67537441 (-) True kdsr
XM_021613430.2 mRNA upstream 112413 67537752 ~ 67562514 (-) False LOC110530405
XM_021613429.2 mRNA upstream 112413 67537752 ~ 67570811 (-) True LOC110530405
TU838577 other downstream 3762 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 42841 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 710322 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 864301 66559196 ~ 66560517 (-) True G737449
TU836773 other downstream 1214827 66193654 ~ 66209991 (-) False LOC110530385
TU840819 other upstream 1725004 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 1983629 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 2300435 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 2300435 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 2356950 69782289 ~ 69783294 (-) True G741177

Expression Profile