RNA id: TU838585


Basic Information

Item Value
RNA id TU838585
length 529
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id G738507
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67429266 ~ 67430037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAATTCAATTCCAAACTCCAACCCTCATATTTCTCTGTACAGTTCTAAatgcatttttaaaaacattttgagaCTACAGGACCAAGAAAAATGTAGCACAAACACACTGGTAGGACGATGTCATTTTATACAAGAGAAGAAAAATATCCAAGAAACAATTTTGTTACAACCATTCATTGAGAAAATATATACAATTGAGTCTTCGGAAAGTTAAAAAAATACCATGCCATATACATTACAAGTTCTAAGACTGTCTCCAATATTTTACAGTCGAGTTGAAATTGTGCTCGCAAAACATCTAACTACTGTATGTGGCTTGTGATGTGTCAATATCACATACATTTCTGATTAAGTAGAATGTCATCTCTTTTCAAAATGTAGCACCACCAAATGTCCCGACCTTTTCCTCTGCAagaaacattattttattttttcagtACACTTTAATTTCAAACGCCTGAAGCAGTAAGCAATGTCATACGACGTCTGTACACCatttctatgtaaaaaaaaacagaaaaaacaaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838586 lncRNA downstream 531 67428224 ~ 67428978 (-) True G738508
TU838583 lncRNA downstream 2187 67426966 ~ 67427322 (-) True G738506
TU838579 lncRNA downstream 4170 67424818 ~ 67425339 (-) True G738504
TU838578 lncRNA downstream 5810 67423242 ~ 67423699 (-) True G738503
TU838570 lncRNA downstream 16664 67412322 ~ 67412845 (-) True G738495
TU838663 lncRNA upstream 63978 67494015 ~ 67494521 (-) True G738562
TU838688 lncRNA upstream 146283 67576320 ~ 67576541 (-) True G738587
TU838720 lncRNA upstream 242975 67673012 ~ 67673616 (-) True G738616
TU838777 lncRNA upstream 253196 67683233 ~ 67683955 (-) True G738670
TU838717 lncRNA upstream 262123 67692160 ~ 67693632 (-) True G738613
XR_005052935.1 mRNA downstream 253341 67056371 ~ 67176168 (-) True LOC110530968
XM_036986027.1 mRNA downstream 253359 67055158 ~ 67176150 (-) False LOC110530968
XM_036986028.1 mRNA downstream 303498 67055158 ~ 67126011 (-) False LOC110530968
NM_001124314.1 mRNA downstream 627730 66798543 ~ 66801779 (-) True gs02
XM_021613410.2 mRNA downstream 746562 66672460 ~ 66682947 (-) True elovl1a
XM_021613428.2 mRNA upstream 47955 67477992 ~ 67528795 (-) False LOC110530404
XM_036986041.1 mRNA upstream 85039 67515076 ~ 67528795 (-) True LOC110530404
XM_036986042.1 mRNA upstream 99768 67529805 ~ 67537441 (-) True kdsr
XM_021613430.2 mRNA upstream 107715 67537752 ~ 67562514 (-) False LOC110530405
XM_021613429.2 mRNA upstream 107715 67537752 ~ 67570811 (-) True LOC110530405
TU838580 other downstream 4170 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 8453 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 47532 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 715013 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 868992 66559196 ~ 66560517 (-) True G737449
TU840819 other upstream 1720306 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 1978931 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 2295737 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 2295737 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 2352252 69782289 ~ 69783294 (-) True G741177

Expression Profile