RNA id: TU838777


Basic Information

Item Value
RNA id TU838777
length 506
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G738670
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67683233 ~ 67683955 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATAACTCATTAGGCTTTCAGTAGCTCTAAACCAACCTCTTGCATGGAGTCTCCAGGTTGATCTTGACAGCCTTCTTAAAGTTGTACAGACTGATGAATCTGTCGTTGAAGGTGGACAGCTCGATGCATCCTTTATAGTTTGGGTAGTTGAGGGAGGCTGGAGGAGTGAAGTTGGAGGGATAGCCCCCGACATAGAAGACCACATCACTATGGTTCAGGTTTAGAAGGTTCCTGGTCAGCTCTCCCTGCTTACTGCTGGTCTGAGGAGGGTCCGGGTCATTAGATGTGAACAGTTTGGTGAGGATCACCTGTGCGTCTTGGTAAATTCTGTGCAGGTCCACCTTGTCAAAGAATGCCGGCTCAGAGGGAGACCTAGTGATGTAGTCTGTCTTGATCTCATACTCTTCTCCGCTCAGCTTGTACACACAGAACAGCACATTCTTCCTCAGGGCCATGCCAATGTAGTCTTTAGATGACTgtggagaagagaggtgaggacCATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU838720 lncRNA downstream 9617 67673012 ~ 67673616 (-) True G738616
TU838688 lncRNA downstream 106692 67576320 ~ 67576541 (-) True G738587
TU838663 lncRNA downstream 188712 67494015 ~ 67494521 (-) True G738562
TU838585 lncRNA downstream 253196 67429509 ~ 67430037 (-) True G738507
TU838584 lncRNA downstream 253314 67429266 ~ 67429919 (-) False G738507
TU838717 lncRNA upstream 8205 67692160 ~ 67693632 (-) True G738613
TU838902 lncRNA upstream 179598 67863553 ~ 67863902 (-) True G738782
TU838903 lncRNA upstream 180078 67864033 ~ 67864350 (-) True G738783
TU839138 lncRNA upstream 191214 67875169 ~ 67875381 (-) True G738998
TU839194 lncRNA upstream 295336 67979291 ~ 67979743 (-) True G739052
XM_021613429.2 mRNA downstream 112422 67537752 ~ 67570811 (-) True LOC110530405
XM_021613430.2 mRNA downstream 120719 67537752 ~ 67562514 (-) False LOC110530405
XM_036986042.1 mRNA downstream 145792 67529805 ~ 67537441 (-) True kdsr
XM_021613428.2 mRNA downstream 154438 67477992 ~ 67528795 (-) False LOC110530404
XM_036986051.1 mRNA upstream 85794 67769749 ~ 67788194 (-) False LOC110530412
XM_036986050.1 mRNA upstream 85794 67769749 ~ 67818199 (-) True LOC110530412
XM_021613440.2 mRNA upstream 257360 67941315 ~ 68125947 (-) False LOC110530414
XM_021613441.2 mRNA upstream 257360 67941315 ~ 68125947 (-) False LOC110530414
XM_021613442.2 mRNA upstream 257360 67941315 ~ 68125947 (-) False LOC110530414
TU838580 other downstream 257894 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 262177 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 301256 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 968737 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 1122716 66559196 ~ 66560517 (-) True G737449
TU840819 other upstream 1466388 69150343 ~ 69157726 (-) True igfbp1
TU841006 other upstream 1725013 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 2041819 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 2041819 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 2098334 69782289 ~ 69783294 (-) True G741177

Expression Profile