RNA id: TU840979



Basic Information


Item Value
RNA id TU840979
length 233
lncRNA type intronic
GC content 0.33
exon number 1
gene id G740694
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69369961 ~ 69370193 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aactggtatactttttatATTTTACACAATTTTATTTAGCCAATTTTGGTCTTCAATGCAGGGTCAACAAGTCCCTTACCGTTTCCCATTTCCACTTGCCTCCATTTTGCAgtaatgctgcaatcagttggttgtaattttggatagagctggcatttcaatatatttttgttaaatgcatgtgtgacaactccaccagtcctaattataataattataatttacaAAGATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU840977 lncRNA downstream 1666 69368012 ~ 69368295 (-) True G740692
TU840976 lncRNA downstream 2347 69367395 ~ 69367614 (-) True G740691
TU840974 lncRNA downstream 4463 69365167 ~ 69365498 (-) True G740689
TU840970 lncRNA downstream 10339 69359382 ~ 69359622 (-) True G740685
TU840968 lncRNA downstream 11962 69355914 ~ 69357999 (-) False G740684
TU840983 lncRNA upstream 4490 69374683 ~ 69375036 (-) True G740698
TU840995 lncRNA upstream 22055 69392248 ~ 69392465 (-) True G740708
TU840997 lncRNA upstream 23306 69393499 ~ 69393699 (-) True G740710
TU840998 lncRNA upstream 26425 69396618 ~ 69397012 (-) True G740711
TU841007 lncRNA upstream 59259 69429452 ~ 69430519 (-) True G740718
XM_036986062.1 mRNA downstream 136967 69183167 ~ 69232994 (-) False LOC110530970
NM_001124561.1 mRNA downstream 212402 69151310 ~ 69157559 (-) False igfbp1
XM_021613484.2 mRNA downstream 374701 68908995 ~ 68995260 (-) True LOC110530426
XM_021613482.2 mRNA downstream 461773 68901719 ~ 68908188 (-) True LOC110530425
XM_021613483.2 mRNA downstream 461848 68901719 ~ 68908113 (-) False LOC110530425
XM_021613494.2 mRNA upstream 64349 69434542 ~ 69450423 (-) True si:ch73-40a17.3
XM_036986849.1 mRNA upstream 91727 69461920 ~ 69474389 (-) True LOC118965618
XM_021613495.2 mRNA upstream 107113 69477306 ~ 69487134 (-) True LOC110530436
XM_021613499.2 mRNA upstream 166975 69537168 ~ 69553690 (-) False LOC110530438
XM_036986068.1 mRNA upstream 167060 69537253 ~ 69553690 (-) True LOC110530438
TU840819 other downstream 212235 69150343 ~ 69157726 (-) True igfbp1
TU838580 other downstream 1944622 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 1948905 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 1987984 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 2655465 66713693 ~ 66714496 (-) True G737422
TU841006 other upstream 38775 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 355581 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 355581 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 412096 69782289 ~ 69783294 (-) True G741177
TU842116 other upstream 781614 70151807 ~ 70160838 (-) True LOC110530971

Expression Profile