RNA id: TU841504


Basic Information

Item Value
RNA id TU841504
length 1006
RNA type TUCP
GC content 0.48
exon number 1
gene id G741177
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69782289 ~ 69783294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagattccaaattgagctctggtgcattctgtttccattgatcatccttgagatgtttattcaacttgattgtagtccacctgtggacaattcaattgattggacatgatttggaaaggcacacacctgtctatgtaaggtcccataattgacagtgcatgtcagagcaaaatccaagccatgtcgaaggaattgtctgtagagcgcagagacagggttgtgtcaaggcacagatctgaggaagggtgccaaaaaatgtctgcagcattgaaggtcccaaagaacacagtggcctccataattcttaaatggaggaagtctggaatcaccaagactctttctgccaaactgagcaatcgggggagaatcgggggagaatggccttagTCACGGTTCAGGTGATCCTGActaaggtcactctgacagagctccagtgttcctctgtggagatgggagaaccttccagaaggacaaccatctctgcaccacgacaccaatcaggcctttatggtagagtggccagacagaagccacttctcagtataagactcatgacagcccgcttggagtttgccaaaagggaccTAAAGGACTCAaggaaacaagattatctggtatGGTGAAatgaagattgaactctttaacctgaatgcaaagtgtcacatctggaggaaacttgacaccatccctacggtgaagcatggcataggcagcatcatgctgtggggatgtttttcagtggcagggactgggagactagtcaggattgagggaaagatgaatggagtaaagtacagagatatccttgatgaaagcctgctccggagtgctcaggacctcagactagtgtgaaggttcaccttccaacaggacaacgaccctaagcacacagccaagacaacgcagtggcttcgggacaagtctctgaatgtccttgagtggcccagccagagaccggacttgaacacgatcaaGCATCTCTGGATTGATGTGAAAATAGCTGAgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU841391 lncRNA downstream 61448 69720489 ~ 69720841 (-) True G741071
TU841341 lncRNA downstream 121167 69651841 ~ 69661122 (-) True G741021
TU841273 lncRNA downstream 224309 69557751 ~ 69557980 (-) True G740963
TU841116 lncRNA downstream 257828 69524225 ~ 69524461 (-) True G740817
TU841115 lncRNA downstream 258602 69523389 ~ 69523687 (-) True G740816
TU841505 lncRNA upstream 1158 69784452 ~ 69785235 (-) True G741178
TU841522 lncRNA upstream 28487 69811781 ~ 69812052 (-) True G741195
TU841538 lncRNA upstream 61464 69844758 ~ 69845031 (-) True G741211
TU841539 lncRNA upstream 62290 69845584 ~ 69845813 (-) True G741212
TU841696 lncRNA upstream 214370 69997664 ~ 69997928 (-) True G741365
XM_021613499.2 mRNA downstream 228599 69537168 ~ 69553690 (-) False LOC110530438
XM_036986068.1 mRNA downstream 228599 69537253 ~ 69553690 (-) True LOC110530438
XM_021613495.2 mRNA downstream 295155 69477306 ~ 69487134 (-) True LOC110530436
XM_036986849.1 mRNA downstream 307900 69461920 ~ 69474389 (-) True LOC118965618
XM_021613494.2 mRNA downstream 331866 69434542 ~ 69450423 (-) True si:ch73-40a17.3
XM_021613508.2 mRNA upstream 273209 70056503 ~ 70076393 (-) False LOC110530443
XM_021613509.2 mRNA upstream 273209 70056503 ~ 70076393 (-) False LOC110530443
XM_021613510.2 mRNA upstream 273209 70056503 ~ 70076393 (-) False LOC110530443
XM_021613511.2 mRNA upstream 273209 70056503 ~ 70076393 (-) False LOC110530443
XM_021613512.2 mRNA upstream 273209 70056503 ~ 70095132 (-) False LOC110530443
TU841404 other downstream 54858 69725774 ~ 69727431 (-) True G741077
TU841403 other downstream 54910 69725774 ~ 69727379 (-) False G741077
TU841006 other downstream 351636 69408968 ~ 69430653 (-) False G740718
TU840819 other downstream 624563 69150343 ~ 69157726 (-) True igfbp1
TU838580 other downstream 2356950 67423863 ~ 67425339 (-) False G738504
TU842116 other upstream 368513 70151807 ~ 70160838 (-) True LOC110530971
TU842204 other upstream 415617 70198911 ~ 70200278 (-) True LOC110530449
TU842419 other upstream 736093 70519387 ~ 70525951 (-) False G742038
TU842800 other upstream 1052064 70835358 ~ 70842457 (-) True G742383
TU843586 other upstream 1287340 71070634 ~ 71071082 (-) True G743076

Expression Profile