RNA id: TCONS_00005806


Basic Information

Item Value
RNA id TCONS_00005806
length 771
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_001803
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1904355 ~ 1921020 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAAGCTAAATAGCCACGTCTTCCAAGTCGTTCTTTTCTTTCAGTTTAACCATAGACTCATATTTTATGTTggtataaacattatttaattaatcaaataatttcaCCTCAGAATTTCGCGCCATTCCTGCGCGCGGGCTGCTGACGTCAGGCGCACAGCAGAGCTAATAGCTAATGCTTcctagcttaaaaaaaaaaaaaaaatgcttcctaGCTTGTTCATAACACGTTTTTACACTGTTGAAATTTCGAGAAAATTCGGATATTCGGAGAAACAGTTCTTATGCTTTGCCATAATCAAATCCTTCGCCTAGGAGGGCAAAATTTTAGTTTCTATACAACATTTTGGATTCAGTATTTCACCAAAAGGTGTTGATCATTTATCCCCCACACTTCCAAAATCTGGGATGAAGCGAAGGCAAAACTCAACCGAAGACCTCTCAGGTCAGGGTCAAAAGCTCTTCTGGAGGTCTTGAGGATTAAACAGTGATGTCATGAGCTATACTGATACACAGAAAATGATGCTCGCTGTTTGTGGAGAGCTACACATTGCATCCACTTGAccataattgagTGTAATCTCCTGAATCACGGTCACCCTGTAAACATGGCAGAAGCATGCTGGGTTGTGCTGGTTTATTCTGGGCAGCTGCCGCTGGGATTTGTGGGACAGTCGTCTGGGTGAGAGCTGCGTTGGGTTGTGTTGAGCCTGGATTTGCGTGTGAATGGATAAACACTGTGCACCTGCTGCTTCACCGTCAACACTGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005668 lncRNA upstream 191120 1698065 ~ 1713235 (+) True XLOC_001799
TCONS_00005804 lncRNA upstream 191585 1703905 ~ 1712770 (+) False XLOC_001800
TCONS_00005805 lncRNA upstream 191585 1708115 ~ 1712770 (+) True XLOC_001800
TCONS_00005803 lncRNA upstream 363623 1538299 ~ 1540732 (+) True XLOC_001794
TCONS_00005667 lncRNA upstream 967313 883086 ~ 937042 (+) True XLOC_001791
TCONS_00005669 lncRNA downstream 45837 1966857 ~ 1991163 (+) False XLOC_001804
TCONS_00003604 lncRNA downstream 61530 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00003603 lncRNA downstream 61530 1982550 ~ 1991468 (+) True XLOC_001804
TCONS_00005807 lncRNA downstream 481288 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00005808 lncRNA downstream 481288 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00003602 mRNA upstream 3693 1899595 ~ 1900662 (+) True XLOC_001802
TCONS_00003601 mRNA upstream 11260 1849874 ~ 1893095 (+) True XLOC_001801
TCONS_00003600 mRNA upstream 12209 1849874 ~ 1892146 (+) False XLOC_001801
TCONS_00003599 mRNA upstream 219473 1681518 ~ 1684882 (+) True XLOC_001798
TCONS_00003598 mRNA upstream 228993 1668106 ~ 1675362 (+) True XLOC_001796
TCONS_00003606 mRNA downstream 311003 2232023 ~ 2393791 (+) False XLOC_001805
TCONS_00003607 mRNA downstream 313263 2234283 ~ 2393791 (+) True XLOC_001805
TCONS_00003608 mRNA downstream 608017 2529037 ~ 2550378 (+) True XLOC_001808
TCONS_00003609 mRNA downstream 647773 2568793 ~ 2575387 (+) False XLOC_001809
TCONS_00003610 mRNA downstream 647897 2568917 ~ 2575387 (+) True XLOC_001809
TCONS_00003597 other upstream 239317 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 1098996 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 1397099 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 1692408 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003605 other downstream 254563 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 767545 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 1064024 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 1487763 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 2572257 4493277 ~ 4493358 (+) True XLOC_001842

Expression Profile

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