RNA id: TCONS_00035865


Basic Information

Item Value
RNA id TCONS_00035865
length 4562
RNA type mRNA
GC content 0.48
exon number 15
gene id XLOC_018202
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33467161 ~ 33487729 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACCCAAGATGGCCGAATCTtcacagtggggctaataattactTTTCGTCAAGACGCTGCTATTTCATGGTGCTCGACGCTCGCGCTGGCCATTCGTCGTTCCGGAAAGCAAAACAAGTGACTCTGTTCAAGTAGTTGCATCGGGGAATGTTTATTTATGCGTGAAGAGACTGGCTGGTCCAACCGCGGCCCTTAGCCAGAATATGGCGGAATACCTGGAGAAAATATAGCTTAGCTTATTATGAACGCGCCGCTTTATACACGACTCTTCCCGCCTTTTCACCGACCTCGCGTGAGTATAATGATTAAATAGCGTTATCGGTACGTCTCTGAAATTCATTCGCGTGTGTTTTGCGCAATTCTGTGTTAAAATGACTCTCGAGAGGAGATAGCCTGCTAGCTGAGGCGCTAGCTACGCTAACCCCGTTTGACTGAATTAGTCGCAGCGTTAGCTTAGCCTAGCTAGCTTAAAGTAAGGGGGCACGAAGAAGAGCAAACACTTTCTTCATCCGCGCTCTGGCTGCATGCTTTTAAACTCATCTCACTCTTATTTTTCGTGCTTCTGTTTATAGAGAGTTTAAAATACCGGGTATGTTGTGGGGAGTCTCGGCTGCACACAGCAGCTAGCTGACCATCACTGGACTGGTCAGAATAATTGTGTGGACAGCGCAAGTTTACTGCGAGAGACTCCACAACAACACACTGCTTCAGCTCCTCGCCCGCGAACGCCGTACATTTCAGTTTGAAGTTGACATCAGATTCTGTTGCATCTCGAGGACTTTGAGATTTATTGAATCAAGGGCAAAAGCCTATCCGAGAGTTACTTGCAAGGATGACTGACACTCGTAGACGAGTAAAAGTGTACACTCTGAATGAGGACCGCCAGTGGGACGATCGGGGAACGGGACATGTGTCATCCGCCTACGTGGAGAGGCTCAAAGGCATGTCTCTCCTGGTGCGCGCCGAAAGCGATGGGTCACTGCTGCTGGAGTCCAAAATCAATCCTAACACCGCCTATCAAAAACAGCAGGACACATTAATAGTTTGGTCTGAGGCTGAAAACTATGACCTGGCCCTCAGCTTCCAGGAAAAGGCTGGTTGTGATGAGATCTGGGAGAAAATATGTCAGGTCCAGGGAAAGGACCCATCGGTAGACATCACCCAGGAGCTGATAGATGAGTCTGAGGAGGAGCGTTTTGATGACATGTCCTCTCCTGGTCTTGAACTTCCTCCATGTGAACTCTCCCGATTGGAGGAGGTGGCCGAGCTGGTGGCGTCATCCTTGCCTTCTCCGCTACGGCGGGAAAAGCTGGCCCTGGCGCTGGAGAACGAGGGCTACATCCGCAAGCTGCTGGAGCTTTTCCGCGTCTGCGAGGACTTAGAAAACAGAGAAGGTCTGCATCACCTCTATGACATCATCAAAGGCATTTTCCTACTCAATCGCACGGCGCTCTTTGAAGTCATGTTCTCTGAAGAATGCATCATGGATGTGATTGGCTGTCTGGAGTTTGATCCATCGCTACCCCAACCACGGAGGCATCGGGAGTTCCTGACCACCACTGCACGCTTTAAAGAGGTCATTCCCATTTCGGACCCAGAGCTGCGGCAGAAGATCCACCAGACGTACCGGGTGCAGTATATTCAGGACATGGTGCTGCCCACTCCATCGGTCTTTGAAGAAAACATGCTTTCCACCCTCCACTCCTTCATCTTCTTCAACAAAGTGGAGATTGTTGGCATGCTGCAGGATGATGAGAAGTTTTTGACTGAGCTCTTTGCGCAGCTAACTGATGAAGCCACAGATGACGACAAACGGCACGAATTGGTAAACTTCCTGAAGGAGTTTTGTGCGTTTTCACAAACGTTACAACCACAGAACAGAGATGCGTTCTTTAAAACCCTTTCCAACATGGGAATCCTGCAAGCGCTGGAAGTTATTCTTGGCATGGATGATGTGCAAGTGCGTGGAGCAGCCACTGATATCTTCTCCTACCTGGTGGAGTACAACCCTTCTATGGTGCGAGAGTTTGTCATGCAGGAGTCACAGCAGAATGATGATGACATTCTGTTGATAAATCTGATCATTGAGCATATGATCTGTGACACGGATCCTGAGTTGGGGGGAGCTGTTCAGCTTATGGGTTTGCTCAGGACGCTAGTGGACCCAGAGAACATGCTAGCAACTGCTAATAAAACTGAGAAGACCGAGTTTTTGAGCTTCTTCTATAAGCATTGCATGCATGTGCTCTCCGCTCCACTTCTTGCCAACACCACTGAAGAAAAACCCAGCAAAGATGATTTCCAGACATGTCAGCTGCTGGCTCTGATCGTAGAGCTGCTCACTTTCTGCGTGGAGCATCACACGTATCACATAAAGAACTACATCATCAACAAAGACATCCTGCGCAGAGTGCTGGTGCTCACTGCATCACAACATGCTTTCCTAGCCTTATGTGCTTTGCGTTTCATGAGAAAAATCATTGGCCTGAAGGATGAGTTTTATAACCGATACATTATGAGGAACTTCCTGTTTGAGCCAGTGGTCAAAGCTTTCCTCAATAATGGATCCAGATACAACCTCATAAACTCAGCCATTATAGAGATGTTTGAGTATGTCAGAGTGgaggaTGTGAAGTCACTGACGGCTCATATCATAGAGAACTACTGGAAGGGCCTGGAGGACGTAGACTATGTTCAGACGTTTAAAGGACTAAAGCTCCGATATGAACAGCAGAGAGAAAGACAGGACAACCCAAAACTTGACAGTATGCGGTCGATTCTGAGAAATCACCGTTTTCGCCGGGATGCACGGACACTGGAAGACGAGGAGGAGATGTGGTTTAATACGGATGAGGAAGACTTAGAGGATGGTGAAGCAGTTGTGCCTCCGTCGGACAAGATGAAGAATGACGAGGACCTTATGGATCCCATCAGCAAATTTATGGAGAGGAAAAAATTGAAAGATTCAGAAGAGAAGGAGGTGTTGACAGGGAAAGCAAGTCTCTCAGGACGGCAAAGTCCCAGTTTTAAACTGTCCTTCTCCAGCTCGCCAAAGGCAAGCCTGTCCTCTCCGCCGACTGCATCCCTTCATCCCGGTTCACCTGGTTCTCCTAGCTCTCCCGGGACAGGGGCCCGGAGCTCTCCCCCTTCGGCAGCTGTCACCACTAAGGGAGGTTTAGTGGGGCTGGTGGACTATCCTGATGATGACGAAGAGGACGAGGATGAGGAAGATGCAGACAGTAAAGAAGAAAGTCCTCCGCTGTCCAAGAAGTCCAAGCTGAGCTCCTAAAAGCACTCCCTCCTCAATCAGCACAGTCACGCTCGAAGGGAGCTTCATCCAGAGACTTTTCCAGTGCTCAGCCTAGAACTCAAACTGAAACTAAATGAATGATGATGAATAcacaaatgaatggataaatgaacgAATGCAGCCCCCCGCAGGAGTCCACGGGGCGCCATGTGAGGAACGGAGGACAGGGAGAGCAAGAGAGGGAGAAGATTCGGTCCCAGAACCAAAAGGTGAATGTCTCCACGTGGAGTTTGTCCAAGTGCCAAtctgcaagagagagagagagagactcgtGAAGCGGACAGAGGGATGGAGGACTGTGGTCTGGACAaagaattataataaaataagaaattaattTCGACAAAGCTAAAAGTTCTGGGGGGTAAAACAGACCTCACACGCAGTCCGTCAGTCAGTCGTTCACTCACAGACACTCGAACTGTTGCCCCACAGAGCGTCCCAGGCCTGGACCAGGACACACTGCCCCCCCCTCTCAGGGAAGGACCTCACATGACCCGAACTGGGCCAGCCAATCCACAACCACCACTCACCTTTGCTGATCTCCATCTCCATTTCTTTCTCTCCTTCCTccagcttttttttctgttgttttttttcccccttgttTTTGACTTTCTAGGGCCAGGCGGGACACTATAGGGAGCAAAGAAGTCTGGGTCGTCATTGTTTAAGATGTCACTGTTGTTCTTGTGGCTCAGCGGAAGTTCTTCCTCTTTCAAAGCCAGCAGTTCCCTCCTTTTTCTTATTCTGTTGTTCTCCTCTCTggtttttttaaaatgacacaaagagACCTGCCTTTAAATGTTCAGGACGTTTTCAGCCGCACTTGAACAGGTTTTTAAAACCTCAGTGGGGGGGAGATAGTTTTACCCTTTTTTTGCCCTTCAAAACTGCAGATTTTTTGGAAAATTTGTAAGCCCGTCTTGATTAAAGATTGAGTGGAACTCTATAGATGTGATTGATTTCTGTcatatcttcatttttttttcttttcttttacttgtGTACACTCTTAGTTGTTCAGTATATTTGGGACCATTAAAAGATCTTTGCTGTAGTAGATCTCTCCCGGTTGTGCTGGTTCCCTGTATTATGTTCAACTGTGCTGATCTTTTTGTTATTTGAACTGGGATTTGGTCATTGAAATGATCCTCCTGTCTGCTCGTCTGAATACGTCAATGGAGAAGCCGTGTCTCTGCTAAACAGCCTGCACACAATTAAAgataacagtttttattttctgaaaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3958 Orthologous to human PPP4R3A (protein phosphatase 4 regulatory subunit 3A).

Ensembl:

ensembl_id ENSDART00000061843

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036885 lncRNA downstream 3793 33357974 ~ 33463368 (-) False XLOC_018201
TCONS_00035864 lncRNA downstream 4163 33461088 ~ 33462998 (-) True XLOC_018201
TCONS_00036884 lncRNA downstream 38283 33357974 ~ 33428878 (-) False XLOC_018201
TCONS_00036886 lncRNA downstream 38326 33427895 ~ 33428835 (-) False XLOC_018201
TCONS_00036883 lncRNA downstream 48148 33349174 ~ 33419013 (-) False XLOC_018201
TCONS_00036887 lncRNA upstream 220389 33708118 ~ 33711255 (-) True XLOC_018211
TCONS_00036888 lncRNA upstream 225811 33713540 ~ 33717068 (-) True XLOC_018212
TCONS_00036889 lncRNA upstream 233265 33720994 ~ 33721947 (-) False XLOC_018213
TCONS_00036890 lncRNA upstream 233265 33720994 ~ 33722205 (-) True XLOC_018213
TCONS_00036891 lncRNA upstream 238163 33725892 ~ 33728373 (-) True XLOC_018214
TCONS_00035863 mRNA downstream 4200 33370214 ~ 33462961 (-) False XLOC_018201
TCONS_00035861 mRNA downstream 292262 32838467 ~ 33174899 (-) False XLOC_018199
TCONS_00035862 mRNA downstream 486108 32962656 ~ 32981053 (-) True XLOC_018199
TCONS_00035858 mRNA downstream 714704 32656812 ~ 32752457 (-) False XLOC_018197
TCONS_00035860 mRNA downstream 797819 32666384 ~ 32669342 (-) True XLOC_018198
TCONS_00035867 mRNA upstream 6195 33493924 ~ 33497128 (-) True XLOC_018203
TCONS_00035868 mRNA upstream 11649 33499378 ~ 33512443 (-) False XLOC_018204
TCONS_00035869 mRNA upstream 11880 33499609 ~ 33512275 (-) False XLOC_018204
TCONS_00035870 mRNA upstream 15438 33503167 ~ 33507458 (-) True XLOC_018204
TCONS_00035871 mRNA upstream 25935 33513664 ~ 33515890 (-) True XLOC_018205
TCONS_00035856 other downstream 817202 32649843 ~ 32649959 (-) True XLOC_018196
TCONS_00035855 other downstream 1006770 32460275 ~ 32460391 (-) True XLOC_018195
TCONS_00035840 other downstream 1456162 32010010 ~ 32010999 (-) False XLOC_018186
TCONS_00035824 other downstream 2421956 31045075 ~ 31045205 (-) True XLOC_018178
TCONS_00035814 other downstream 3092255 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035876 other upstream 113684 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035878 other upstream 168434 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035879 other upstream 169605 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035881 other upstream 213388 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035885 other upstream 460913 33948642 ~ 33951690 (-) False XLOC_018218

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_09266964_09281814.mRNA True 3045 mRNA 0.49 15 CI01000325 9266624 ~ 9282062 (-)
rainbow trout (Oncorhynchus mykiss) TU186027 True 649 TUCP 0.43 2 NC_048566.1 57333078 ~ 57333902 (-)
striped catfish (Pangasianodon hypophthalmus) TU186027 True 258 lncRNA 0.50 1 NC_047604.1 616707 ~ 616964 (+)
bowfin (Amia calva) TU186027 True 620 lncRNA 0.32 2 CM030141.1 3216784 ~ 3295868 (+)
tiger barb (Puntius tetrazona) TU186027 True 453 lncRNA 0.35 2 NC_056716.1 12972530 ~ 12973130 (-)