RNA id: TCONS_00003603


Basic Information

Item Value
RNA id TCONS_00003603
length 4181
lncRNA type lincRNA
GC content 0.41
exon number 2
gene id XLOC_001804
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1966857 ~ 1991468 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGTGGCAGCTGGCCCGCGGGGTGTTAAAAATAGCCAGGTCAAGTGCCCTGGTTACACGGGCCAATTTAGTTACAGTTGACACTCATAAGAGCTGCTTCTGGTGCCAGACGCATAATTGACAGAGAACAGTCAGACGGGTAAGCAAGCATTTAGTTTTCATTTCGTTATTGCAGCCATTTTTTGTTATGCTGTTGGATGCGGAGCTCTTTTGAAATCGCAATTAACACTGCTGGCATTTAACACAATTTCATTGCTTTTAAATATAGCATGAAAGCACAGCGTTCTAGAATTAATCACGGAAGCAATTTCACGAGGTGTTGCTTTTGCCAGATAAGTGATGGTTCCCTGTATTATATAACATGAAAATCTTCCTAATAGTATTATCCTTCATTTTCTACCATGTTTATATGTAATCGACTGTCCTGGTTAAAGAGAATGCACGCTATTAGATGGAGCTATTGTAAACAAATGCACATTTTACGGTTAGTTTATGCCGGAGAACGTTCGATATTAAATCTTCCTCCTTCCCTGACAGCTTCATCTTTGCTCACGTTAGAAGTCTCTGTAATAATGGACAAGAACGCAGAGGTGTTAGCGTGTGGCGCTTCAATTATGAAGGATGTCTGGGAAATCCGACTGAGGGAGTATCGACAGAAGCGGCAGATGGAAGAGGAGAGGATACGGAGGAGTGCTTTGGAAAGAATCAATCAAGATTGGCATGCGCGCATGACCTCCAAGATAAAAACCCTGAAGAGACTGGAGAGGAAAGCAAAGCTTCCTGAAGAACCAACCCTTGATGCACAGAAGGCCAAAAATACACATTTGGGAAGACCTCAAGGTTTCCAGAGCAGTCGGATTCAGAAGCAGGCGGACACGGCAAAGACCACAAAAGCCAGTAAACTGGCCCTGTTACGCCACCTCAACGAAAGCTGCCCGGGGTTGATGGTTTGGGCAAAGTCCTGGAAGTTCTCTCAACCATTGCCGAAACCTGAAGAAAATCCTTGTGTGGTCAACTGGGGACAGTCATGGAAGTTTCTCAATCTTCAACCAAACACGGAGAACAAACCCTGGTGTGATCTTGGTTTTGATGCCAACAATAATATAAGCACCAATGATGTGCTTCTATGGGAGAAGCTCAGCAAATCCTTAAACTCTGAGTGGATTCAGCCAGATCTGGTCACTGCAGAATTGGAAAAGTCGTGGAAATTCACTCAGAAAGCAAGAGAGCCTAATGAAGGCACAAGTAATTGTGCAAATAAAATCCAAGAGAAATGTTATGAGCTGTGGGGGGAAAGTGCACCAGAATGGCAGGAGTCATGGAAGTCAACGAAGCATGTTAAAGAAGCAGAAATCAGGATGGACATTCAGCCATCAGCTAATGAGGAAAAGCAATCTGAATGTCCCTGGGATaactcctggatgtactttaagAAGCAGCTCCATACAAGTGATAATTCAGCTTGGAAAGAATCTTGGAGGGTTGCAAATACCACATCAAGACCAGAGTCGAAATCAGTGCAGTTTCAAGCAGCGGTGCCTGAGGAGATGCATCACGACATCTACAACATGATAATGAACATGTCTAGAGAGATGACGCACGCAATTCTGTTCGGTGAGAGGGATCCGCAGCCATCTGAGTGGGAAAAATCTTGGAAGACCATTAAAAATCAGTCAGAGTATAAAGAAGAGATAAATAAAGCTGAGGTGGAAGTGAAGGTTGAGACACAGAAACCAGACAATTCCAAACAACAAGCTGAGCGTGTGAAATTCGACATACTTGCTTTGCCAAAAATCCAGAAGAAGCAAGAGATGCTTCATTCCCCAAAGGAAATAGATTGGAATGATTCCTGGAAAATGTTAAAACGCCACTGTGGAGAGGAACGAGGATTTAGGAGCCCAAGAGGTCCACTTCAACAATTACCAACACAAACTCTCAACGAATGGACTGATTCTTGGAGATTCACAAACTTAACTCTCAACCAAGATGCTGGTTTATGGGAGCAGGGATGGTCCACCAATACTCAGCCTCGGCCTATTAGAAGAGTGCAAGAAAATGAGGATTTCCCACATAATGGACCGGCAGGGGTTCGCGTCTGGTCTGAAACCTGGAGGTCCACGAGACGTCAGCATCTTGCGGAAAGACAAGGAGCAAGCGCATCAACTCAACCAATATGTCGACATGCATACGCAAGATCTGTCGCCGACTGGGATCAATCATGGAAATCATCAACTCATAAGCATCATGATAGACCCTCCATGACAGATTGGGCAGATTCTTGGAGGTTCTCCAACTCTGAAGATCTCCAACCAGAGTATTCGTGGTTTGAGAAGTCAATGGAAATTAAAGGGAGAATCTGCAGAGCATCTAATGCATTTCACAGACATATGGATTCCCAAGACTGGAATGACTCTTGGAGGGTGAAGAAGACGGTTGATGGACTTGCGCATCTTATGAAGAATGAAGTGCTGGATTGGGATAATTCTTGGATGTTTTCCAGCACAGGGTTTTATCAAAGACAAGGTGAAGTTTACTCGAATTTCCAGACTGATGTCAGAAGCAATGCAATGTTAAAATCAGTCCAGATGGAGTGCAGTTCAGATTGGGTTCGGTCATGGAAGATGTCGAACCCACAACCCCCAAAGAACATCACCTCATGGGTTGATGCAAAGTCATTCAATGCACAGAACAATGCATTGATGCTATGGTCGAAACACAAACACATCAATTATTTACCTTCTGCTTTGGTCAATGACCTGCAGCTGAATATCTGGAGCAAGTCTTGGAGGTTCGTGAAGATGGATGTTGACTCAAACCTGCGAGGTGAATCTGTCAAAACGACAAAGAGTCCAGCGGTCATGTGTTTGAACATAGATCAGCAGAAACCGCAGGAGAAGAGATGGAGCGATGCATGTAAAATAGCCAAGATGCAAACGAAGCGATCTAAATCAAGCCACAATGAAGACAAACATGAACATGAGATGTTCGCAGAATGGACTGAATCTTGGAAATTCTCAAATAATCTAAAAAGCCATGACCCTGCAATGGTTTCTGTTTCACTGGGAAATTGGAGAAACTCCTGGAAGTTTCTCCTTGAGTCGTATGCGCCAGTGAACGGCCAGTGAGTCGGTAAAGATTAAAGACTTTGCAGGTTTCAAGAGTGCAgctcttcagaaatcatttaaaatacatgACGGATGATGTTTTAAAAACTTCTACACATTCGACCCCAAATAAAGTTGTTCATGCAATTGCGCTTGGTCTTATCTATTGTGTCGAAGCACAACAAACCATAACAAATCATTATTTTTGCAGCAGTCATGCTGGCAGCTGTGAACCGCAGCTCTGGTTTAACAGAGCacatcatttattctttttcaagtCGTTGCACATAGAGACCATGTGGACCAGCACGAATGCAGTTGTTTAACTCAAATACAAGTGTAGTAAATTGGACGCCGTTCAACAGAAAGCTAGAGCTTCTCTGAACACAAACCTCAGTAGTACGACAtgcaaacatacagttgaagtcagtattattagcccccctgtatattttgttccccaatttctgtttaactgagagattttctcaacacattttctaaacgtaactcatttctaatacctgatttattttatctttgccatgatgacagcacataatatttgactagatattctttaagatagtagtattcagcttaaagtgacatttaaaggcttaactagggtaattaggcaagtcattgtataacagtggtttgttctggagacaataaaaaaaagctaataatattgactctaaaacggcttaattttttttttaaaaactgcttttattctagccgaaataaaacaaataagattattACAGGTAATATTATATAAAGgtaatattatgtaaatatataaatattaaataatttaaaaatataaatttatattaaaaatattataaaatttatataaatattatataaaaacattacagcacatactatgaaaattattcattatttgggaaatatttgaaaaagaatcaaATAATCAAAGAATCAAATATCAAATACTTTGAATTcaaaggagggtgaataattatgacttttactgtatacactgcaaaaatgtacTGCTTAATCAGAGGAAAAGCGTACTTAGCAGATAAAAGCAAcagaaac

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:1905360 GTPase complex cellular_component
GO:0044306 neuron projection terminus cellular_component
GO:0098793 presynapse cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194404

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005806 lncRNA upstream 61530 1904355 ~ 1921020 (+) True XLOC_001803
TCONS_00005668 lncRNA upstream 269315 1698065 ~ 1713235 (+) True XLOC_001799
TCONS_00005804 lncRNA upstream 269780 1703905 ~ 1712770 (+) False XLOC_001800
TCONS_00005805 lncRNA upstream 269780 1708115 ~ 1712770 (+) True XLOC_001800
TCONS_00005803 lncRNA upstream 441818 1538299 ~ 1540732 (+) True XLOC_001794
TCONS_00005807 lncRNA downstream 410840 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00005808 lncRNA downstream 410840 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005809 lncRNA downstream 508065 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005670 lncRNA downstream 986067 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005810 lncRNA downstream 1271110 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00003602 mRNA upstream 81888 1899595 ~ 1900662 (+) True XLOC_001802
TCONS_00003601 mRNA upstream 89455 1849874 ~ 1893095 (+) True XLOC_001801
TCONS_00003600 mRNA upstream 90404 1849874 ~ 1892146 (+) False XLOC_001801
TCONS_00003599 mRNA upstream 297668 1681518 ~ 1684882 (+) True XLOC_001798
TCONS_00003598 mRNA upstream 307188 1668106 ~ 1675362 (+) True XLOC_001796
TCONS_00003606 mRNA downstream 240555 2232023 ~ 2393791 (+) False XLOC_001805
TCONS_00003607 mRNA downstream 242815 2234283 ~ 2393791 (+) True XLOC_001805
TCONS_00003608 mRNA downstream 537569 2529037 ~ 2550378 (+) True XLOC_001808
TCONS_00003609 mRNA downstream 577325 2568793 ~ 2575387 (+) False XLOC_001809
TCONS_00003610 mRNA downstream 577449 2568917 ~ 2575387 (+) True XLOC_001809
TCONS_00003597 other upstream 317512 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 1177191 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 1475294 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 1770603 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003605 other downstream 184115 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 697097 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 993576 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 1417315 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 2501809 4493277 ~ 4493358 (+) True XLOC_001842

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000178_00341651_00375781.mRNA True 3838 mRNA 0.43 6 CI01000178 341045 ~ 375899 (+)