Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00035875 |
| length | 5158 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 32 |
| gene id | XLOC_018209 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 33601046 ~ 33705044 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0018107 | peptidyl-threonine phosphorylation | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0007266 | Rho protein signal transduction | biological_process |
| GO:0031032 | actomyosin structure organization | biological_process |
| GO:0048598 | embryonic morphogenesis | biological_process |
| GO:1901888 | regulation of cell junction assembly | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0070121 | Kupffer's vesicle development | biological_process |
| GO:0003007 | heart morphogenesis | biological_process |
| GO:0030866 | cortical actin cytoskeleton organization | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0060287 | epithelial cilium movement involved in determination of left/right asymmetry | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0000281 | mitotic cytokinesis | biological_process |
| GO:0005813 | centrosome | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0072518 | Rho-dependent protein serine/threonine kinase activity | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060125-2 | Predicted to enable Rho-dependent protein serine/threonine kinase activity. Acts upstream of or within Kupffer's vesicle development; epithelial cilium movement involved in determination of left/right asymmetry; and heart morphogenesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in centrosome and cytoplasm. Is expressed in several structures, including EVL; Kupffer's vesicle; forerunner cell group; hindbrain; and somite. Orthologous to human ROCK2 (Rho associated coiled-coil containing protein kinase 2). |
| ensembl_id | ENSDART00000166573 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036885 | lncRNA | downstream | 137678 | 33357974 ~ 33463368 (-) | False | XLOC_018201 |
| TCONS_00035864 | lncRNA | downstream | 138048 | 33461088 ~ 33462998 (-) | True | XLOC_018201 |
| TCONS_00036884 | lncRNA | downstream | 172168 | 33357974 ~ 33428878 (-) | False | XLOC_018201 |
| TCONS_00036886 | lncRNA | downstream | 172211 | 33427895 ~ 33428835 (-) | False | XLOC_018201 |
| TCONS_00036883 | lncRNA | downstream | 182033 | 33349174 ~ 33419013 (-) | False | XLOC_018201 |
| TCONS_00036887 | lncRNA | upstream | 3074 | 33708118 ~ 33711255 (-) | True | XLOC_018211 |
| TCONS_00036888 | lncRNA | upstream | 8496 | 33713540 ~ 33717068 (-) | True | XLOC_018212 |
| TCONS_00036889 | lncRNA | upstream | 15950 | 33720994 ~ 33721947 (-) | False | XLOC_018213 |
| TCONS_00036890 | lncRNA | upstream | 15950 | 33720994 ~ 33722205 (-) | True | XLOC_018213 |
| TCONS_00036891 | lncRNA | upstream | 20848 | 33725892 ~ 33728373 (-) | True | XLOC_018214 |
| TCONS_00035874 | mRNA | downstream | 17267 | 33571312 ~ 33583779 (-) | True | XLOC_018208 |
| TCONS_00035873 | mRNA | downstream | 34406 | 33564425 ~ 33566640 (-) | True | XLOC_018207 |
| TCONS_00035872 | mRNA | downstream | 44063 | 33555381 ~ 33556983 (-) | True | XLOC_018206 |
| TCONS_00035871 | mRNA | downstream | 85156 | 33513664 ~ 33515890 (-) | True | XLOC_018205 |
| TCONS_00035869 | mRNA | downstream | 88771 | 33499609 ~ 33512275 (-) | False | XLOC_018204 |
| TCONS_00035882 | mRNA | upstream | 47923 | 33752967 ~ 33790003 (-) | True | XLOC_018216 |
| TCONS_00035883 | mRNA | upstream | 104390 | 33809434 ~ 33864804 (-) | False | XLOC_018217 |
| TCONS_00035884 | mRNA | upstream | 135612 | 33840656 ~ 33909872 (-) | True | XLOC_018217 |
| TCONS_00035886 | mRNA | upstream | 243598 | 33948642 ~ 33959815 (-) | False | XLOC_018218 |
| TCONS_00035887 | mRNA | upstream | 243598 | 33948642 ~ 33961697 (-) | False | XLOC_018218 |
| TCONS_00035866 | other | downstream | 125561 | 33471221 ~ 33475485 (-) | True | XLOC_018202 |
| TCONS_00035856 | other | downstream | 951087 | 32649843 ~ 32649959 (-) | True | XLOC_018196 |
| TCONS_00035855 | other | downstream | 1140655 | 32460275 ~ 32460391 (-) | True | XLOC_018195 |
| TCONS_00035840 | other | downstream | 1590047 | 32010010 ~ 32010999 (-) | False | XLOC_018186 |
| TCONS_00035824 | other | downstream | 2555841 | 31045075 ~ 31045205 (-) | True | XLOC_018178 |
| TCONS_00035885 | other | upstream | 243598 | 33948642 ~ 33951690 (-) | False | XLOC_018218 |
| TCONS_00035911 | other | upstream | 998033 | 34703077 ~ 34706572 (-) | True | XLOC_018233 |
| TCONS_00035933 | other | upstream | 1805821 | 35510865 ~ 35510980 (-) | True | XLOC_018244 |
| TCONS_00035936 | other | upstream | 1836238 | 35541282 ~ 35545194 (-) | True | XLOC_018246 |
| TCONS_00035984 | other | upstream | 4225643 | 37930687 ~ 37934315 (-) | True | XLOC_018273 |
