RNA id: TCONS_00035879


Basic Information

Item Value
RNA id TCONS_00035879
length 767
RNA type processed_transcript
GC content 0.48
exon number 6
gene id XLOC_018209
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33601046 ~ 33705044 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGTTCATGCCAGGTGGAGATCTGGTGACTCTGACCAGCAACTATGACATCCCAGAGGAATGGGCTCAATTCTATACGGCAGAAGTGGTGCTGGCACTCGACGCCATCCATTCTCTGGGCTTCATCCACAGAGACATCAAACCAGACAACATGCTGCTGGACCGCAATGGACACCTCAAACTCGCAGACTTTGGCACATGCATGAAGATGGACTCGACTGGTATGGTACGCTGTGACACTGCTGTTGGGACACCTGATTACATTTCTCCAGAGGTTTTAATGTCTCAAGGAGGGACTGGTTATTACGGTCGCGAGTGTGACTGGTGGTCTGTTGGTGTTTTTATTTATGAGCTTCTAGTGGGCGACACTCCATTTTATTCCGAGTCTCTGGTGGGCACATATGGAAAGATCATGGATCACAAGAACAGCTTAACTTTCCCAGATGATATTGAAATGTCAAAGAATGCCAAAGACCTCATCTGTGCCTTTCTGAGTAGCAGCTGGAGGAGTCAAACCGTACGCTGACTGTGGATGTTGCCAACCTGGCCAGTGAGAAAGAGGAGCTCAACAATAAACTGAAGCACATACAGCAAAaGCTGGAGAAGATCAAAGAAGAAGAGAAACAGATGAAATCTCTCACAGTGTCGTATGAGAAGCAGATACAGGTGGAGAAAACACTCAAGATTCAGGCTATAAACAAGCTGGCGGAGGTCATGAAGAAGACGGACGGCAGGCCACACCAAATCAACAACACAGACATCCGCAG

Function

GO:

id name namespace
GO:0018107 peptidyl-threonine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0007266 Rho protein signal transduction biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:1901888 regulation of cell junction assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0016310 phosphorylation biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0005813 centrosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0072518 Rho-dependent protein serine/threonine kinase activity molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060125-2 Predicted to enable Rho-dependent protein serine/threonine kinase activity. Acts upstream of or within Kupffer's vesicle development; epithelial cilium movement involved in determination of left/right asymmetry; and heart morphogenesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in centrosome and cytoplasm. Is expressed in several structures, including EVL; Kupffer's vesicle; forerunner cell group; hindbrain; and somite. Orthologous to human ROCK2 (Rho associated coiled-coil containing protein kinase 2).

Ensembl:

ensembl_id ENSDART00000153420

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036885 lncRNA downstream 193966 33357974 ~ 33463368 (-) False XLOC_018201
TCONS_00035864 lncRNA downstream 194336 33461088 ~ 33462998 (-) True XLOC_018201
TCONS_00036884 lncRNA downstream 228456 33357974 ~ 33428878 (-) False XLOC_018201
TCONS_00036886 lncRNA downstream 228499 33427895 ~ 33428835 (-) False XLOC_018201
TCONS_00036883 lncRNA downstream 238321 33349174 ~ 33419013 (-) False XLOC_018201
TCONS_00036887 lncRNA upstream 19519 33708118 ~ 33711255 (-) True XLOC_018211
TCONS_00036888 lncRNA upstream 24941 33713540 ~ 33717068 (-) True XLOC_018212
TCONS_00036889 lncRNA upstream 32395 33720994 ~ 33721947 (-) False XLOC_018213
TCONS_00036890 lncRNA upstream 32395 33720994 ~ 33722205 (-) True XLOC_018213
TCONS_00036891 lncRNA upstream 37293 33725892 ~ 33728373 (-) True XLOC_018214
TCONS_00035874 mRNA downstream 73555 33571312 ~ 33583779 (-) True XLOC_018208
TCONS_00035873 mRNA downstream 90694 33564425 ~ 33566640 (-) True XLOC_018207
TCONS_00035872 mRNA downstream 100351 33555381 ~ 33556983 (-) True XLOC_018206
TCONS_00035871 mRNA downstream 141444 33513664 ~ 33515890 (-) True XLOC_018205
TCONS_00035870 mRNA downstream 149876 33503167 ~ 33507458 (-) True XLOC_018204
TCONS_00035882 mRNA upstream 64368 33752967 ~ 33790003 (-) True XLOC_018216
TCONS_00035883 mRNA upstream 120835 33809434 ~ 33864804 (-) False XLOC_018217
TCONS_00035884 mRNA upstream 152057 33840656 ~ 33909872 (-) True XLOC_018217
TCONS_00035886 mRNA upstream 260043 33948642 ~ 33959815 (-) False XLOC_018218
TCONS_00035887 mRNA upstream 260043 33948642 ~ 33961697 (-) False XLOC_018218
TCONS_00035866 other downstream 181849 33471221 ~ 33475485 (-) True XLOC_018202
TCONS_00035856 other downstream 1007375 32649843 ~ 32649959 (-) True XLOC_018196
TCONS_00035855 other downstream 1196943 32460275 ~ 32460391 (-) True XLOC_018195
TCONS_00035840 other downstream 1646335 32010010 ~ 32010999 (-) False XLOC_018186
TCONS_00035824 other downstream 2612129 31045075 ~ 31045205 (-) True XLOC_018178
TCONS_00035881 other upstream 12518 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035885 other upstream 260043 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035911 other upstream 1014478 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035933 other upstream 1822266 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 1852683 35541282 ~ 35545194 (-) True XLOC_018246

Expression Profile

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