RNA id: TCONS_00036887


Basic Information

Item Value
RNA id TCONS_00036887
length 876
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id XLOC_018211
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33708118 ~ 33711255 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAACTTGAAAAAAGATGTGTGAATTTGGGgtgaaaaatataaatttatggatttaaaaaaaatgtatttggcaGAGCACAAATTTGTATTACAAGTTgccttaaaaaaagatttatttacagCAGAATGCAAAAGAGAAAATGAAATAATCAGGAGAAATTgatagaaagaaaagaaaaaaagttttattcaccattcaaaatttgttatgtctaaaaacaaaacatgaagctCATTTGGTCCAGCTGACAGAGATAGATTATTATAGATTATTTGTAGTCGAAAGatttgtataaattatttatacactTATGATTTAAGGGGAATTTCcccaaacaaacaattaaattactTACAGCAGGGTCAGGAAAAATGTGGATATGAGGGCTTTTAAGTTAcatctcaaactggattcctggagggccgcagctctgcacagttttgctccaaccctaatcaaacacagctgatccaaataatcaaggtgttctaGACTACTTGAGACTAGTAAGCAGGTGTAAGTTGGAGGTAGTTGGAGATaaagagctgcggccctccatgaTATAAGCTTGAGACCGTTGTGTTTCAGTTTGAGAACTGCAGCTGTAATTACCTCCTCTACCTCCAAATCCTCAGTTgtttcttcttctccttcttcttcctcctcctcctcctcctccatgtTGCTCTGTTTCATCAATGACTCTTTCTTGTCAGGGTCCCACTTCTCTTTTGGGAACACACAGCCTGTTTCTGGATGCTGACGCTCCTCCGATAGCCTGCGGATCAGGTGTTTGACGACGTCATAGCAACAAGCCGACAACAACAACGACAGAGGAAACGTATATGTAACCGTGTGCCTAAATGGACCTTCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036885 lncRNA downstream 244750 33357974 ~ 33463368 (-) False XLOC_018201
TCONS_00035864 lncRNA downstream 245120 33461088 ~ 33462998 (-) True XLOC_018201
TCONS_00036884 lncRNA downstream 279240 33357974 ~ 33428878 (-) False XLOC_018201
TCONS_00036886 lncRNA downstream 279283 33427895 ~ 33428835 (-) False XLOC_018201
TCONS_00036883 lncRNA downstream 289105 33349174 ~ 33419013 (-) False XLOC_018201
TCONS_00036888 lncRNA upstream 2285 33713540 ~ 33717068 (-) True XLOC_018212
TCONS_00036889 lncRNA upstream 9739 33720994 ~ 33721947 (-) False XLOC_018213
TCONS_00036890 lncRNA upstream 9739 33720994 ~ 33722205 (-) True XLOC_018213
TCONS_00036891 lncRNA upstream 14637 33725892 ~ 33728373 (-) True XLOC_018214
TCONS_00036892 lncRNA upstream 23598 33734853 ~ 33735274 (-) True XLOC_018215
TCONS_00035875 mRNA downstream 3074 33601046 ~ 33705044 (-) False XLOC_018209
TCONS_00035877 mRNA downstream 3365 33649543 ~ 33704753 (-) False XLOC_018209
TCONS_00035880 mRNA downstream 32442 33669346 ~ 33675676 (-) True XLOC_018209
TCONS_00035874 mRNA downstream 124339 33571312 ~ 33583779 (-) True XLOC_018208
TCONS_00035873 mRNA downstream 141478 33564425 ~ 33566640 (-) True XLOC_018207
TCONS_00035882 mRNA upstream 41712 33752967 ~ 33790003 (-) True XLOC_018216
TCONS_00035883 mRNA upstream 98179 33809434 ~ 33864804 (-) False XLOC_018217
TCONS_00035884 mRNA upstream 129401 33840656 ~ 33909872 (-) True XLOC_018217
TCONS_00035886 mRNA upstream 237387 33948642 ~ 33959815 (-) False XLOC_018218
TCONS_00035887 mRNA upstream 237387 33948642 ~ 33961697 (-) False XLOC_018218
TCONS_00035881 other downstream 6885 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 19519 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 21738 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035876 other downstream 50549 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035866 other downstream 232633 33471221 ~ 33475485 (-) True XLOC_018202
TCONS_00035885 other upstream 237387 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035911 other upstream 991822 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035933 other upstream 1799610 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 1830027 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 4219432 37930687 ~ 37934315 (-) True XLOC_018273

Expression Profile

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