RNA id: TCONS_00003606


Basic Information

Item Value
RNA id TCONS_00003606
length 3747
RNA type mRNA
GC content 0.54
exon number 24
gene id XLOC_001805
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2175583 ~ 2393791 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTGGTGGATTGGTgaagaagaaggtcgctggAGCTGTGATTCTCCGCTGGTGTCCGGTTTGCCTCAGTCGGCCTTCACTAGTTCATCAGAGCTGTCGAGCAGTCACGGGCCGGGATTCGCCAAACTCAACCGGAGAGACGGTGCTGGGGGCTGGTCTCCGCTGGACTCTAATAAGTATCAGTGGCTGGAGATCAAGCTGGAGCAGCGCACTGAGATTACGGGGGTCTCCAGCCAGGGCCGATACGGCAGCTCAGACTGGGTCACTCGCTACCTCCTCATGTTCAGTGACACGGGACACAACTGGAGACCGTACCGCCAGGAAGACAGCATAGGGGCATTTTCTGGGAACTCCAATGCTGACAGTGTAGTGATGTACAAACTCCAGCAACCAGTGGTGGCTCAGTATCTCCGGATCCTGCCGCTCGACTGGAACCCCAACGGGAGGATCGGCCTGAGGCTTGAGGCTTACGGCTGCCAATACAGGTCAGACGTGGCTGGTTTTGATGGTGCTGCTCACCTGCTCTACAGGCCGGATCCCGGTGTCAATCCTGCAGATAAAGACATGTTATCCATGAACTTCAAAACCATGCAGAGCTCCGGCCTTCTGCTGCACATGGAGGCTCACAGCGGACACACACTGACTCTGGACCTGTTCAAAGGAAGACTCGTACTGGCTTTATCAGCTGATTTCCACCCTCTCTGGTCTGTCGGGAGTCTTCTGGACGACCAGCACTGGCACCATGTCAGCATTGAACGGGTTAGAGGACTGGTCAACTTCACCGTGGACAAAAACACCCAGGCTACACAAACAAAAGGTTGTACAAGTCacttaagaaataaaataataataatgataataatgatattaatggggcgtcacggtggcAAATCTCACTCCAGGAGAAACTTCCACGGCTGCTTGGAAAACGTGTTTTACAATGGCGTCAGTGTGATTGATGGCGCCAAAGAGAAGCGAGTGGCCATTACAGGAAACGTCAGCTTTGCCTGTTCTGAGTCTATTGAAGTGCCAGTGACGTTCGCCGGTCCTAGAAGCTTCCTGGCCGTGCCGTGGGTCTCCGGTGGAGAAAGTGTGTCGGTCAGCCTGGAATTCAGAACGTGGAATAAAGCGGGTCTGCTGATGACCTTTGACCTTCAGCAGAACGCAGGAACACTGTGGCTTTATCTGAGCGAAGCCAAAGCACGACTGCAGATCCAGAAGAGCGATCCACAGAGTGTGTTCTTTCTCTCCACAGGTGTTAATTTAAATGATGGTCAGTGGCACCGGCTGGAGCTGGCCATCCGTCGGGGGCGTCTCGCAGTCACCGTGGACCAAACAGACAGCTCTGCAGTGGCCACTTCTGTCTTCGCGGCTCCTGACAGCGTGCTATTCTTAGGCGGATGTCCAGGAGACGGCAGCGGCTGCAGAAACCCCTTCAATGTTTTCCAGGGATGTATGCGGCTCATCCGGACGGACGGCGCTTTAGTGGATCTTATCAAAGTGCAGCAGATGTTGTTGGGGAATTTCAGCGATCTGCAGATGGACGTGTGTGGGATAGTCGACAGATGCTCCCCGAACCATTGTGAACACGGAGGGAAATGCTCGCAGTCATGGAGCACGTTTCACTGCAACTGCTCTGCCACAGGCTACAGCGGAGCGACCTGCCACAGCTCCATTTACGAAGCATCGTGTGAGGCCTACAAACACAAAGGAAACACTTCTGGCTTTTACTACATCGACGTGGATGGAAGCGGCCCCATCAAACCTCAGCTAATCTACTGCAACATGTCAGataaAGCCTGGATGGTGATCCAGCATAATAACACGGAGCTCACCAAATTAAAAACATCCTCTGGGATAAATCAGCACTTGGCCCATTTTAACTATTCGGCGGACGCGGAGCAGATCCGGGCCGTCATCAGCCAATCCGAACACTGCGAGCAGGAGCTGTCCTACCACTGCAGAAAGTCCCGGCTCCTGAACACTCCAGACGGTGCCCCCTTCAGCTGGTGGGTGGGTGGCTCTGGTGAAGCACACATGTACTGGGGTGGAGCAGTGCCCGGCAGTCAGCAGTGCGCCTGTGGTCTGCAGGGGAACTGTGTGCATCCAGAACACTTCTGCAACTGTGACGCCGACAGCAAAGACTGgtccAATGACTCTGGTTTGCTAGCTCATAAAGAGCATTTGCCGGTGCAATCGCTGGCGCTGGGAGACATCAGCCGCTCGGGGTCTGAAGCGGCGTATAGAGTCGGCCCACTGCAGTGCTACGGTGACGGTAACTTCTGGAACACTGCCTACTTCAACAAGGAGACGTCATACCTGCACTTTCCCACCTTCCATGGGGAGCTGAGCGCAGACATCTCCTTCCTGTTCAAAACCAGCTCTTCATCAGGAGTGTTCCTGGAGAATCTGGGCTTCAAAGACTTCATCCGCATCGAGCTGAGCTCGCCAACTGAGGTGGTGTTCTCCTTTGACGTGGGCAACGGTCCGCTGGACGTGCGAGTGCAGACGCCGAGCGCATTAAACGACGAGCGCTGGCATCACGTCAGAGCCGAACGCAACGTGAAGGAGGCCTCACTGTGTGTGGACCAGCATCCGGCTGCCGTGCAGAAAGCCCCCGCTGACGGACACATCCATCTGCAGCTCAACAGCCAGCTGTTCGTAGGAGGAACGGCGTCCAGGCAGAAGGGCTTTCTGGGCTGCATCCGCTCTCTGAAGCTGAACGGCAGGACTCTGGATCTGGAGGAGAGGGCTGCGATCACGCCTGGAGTGAGTGCTGGATGTCCCGGTCACTGCAGCAGCTACGGTGGCCTGTGTCTAAATCACGGCTCCTGTGTGGAAAAATACAGCGGCTTCACCTGCGACTGCAGCCTCTCGCCCTTCACTGGAACCTTCTGTCATAAAGAACTTTCTGCCTTCTTCAAACCGGGAACATCAGTGACGTACACATTTAAGGAGCCGTACGAGCTGAACAGGAACATCAGCGCACAGTCGTCCTCCATCTACTCTGATTTAACGCTGAGAGGAGAGAATATTTCACTGAGCTTCAGGACGAGTCAAGCTCCGGCGCTGCTGCTTTACGTCAACTCCTACTACAGAGAATACCTGTCCATCCTGCTCAACAGAAACGGTCTGAAACCATCTCTTCCTCTCTCCAGCGGCAGGAATCTGGCCAACGGGCAGCTCCACAGAGTCAGCGTCCAGAGACTGGCAGAGACGCTCAGCATTCAGATCTActcagatgtgtgtttgtgttcttgTTTTGCAGACTCTGGTGAAGTGGATCCAGAGATCGGTCGTCTGAATGCTCTGGGCTTCACCGGCTGTCTGTCTGTGGTCCAGTTTAACTCCATCTCTCCGCTGAAGGCAGCTTTACTGTATCCCGACACCAGTCCTGTCATAGTCACCGGATCGCTGAGCGAATCCGGCTGCGGATCGTCTTTATTGTCCAACCCTCACGCAGCGGAGACCACTCACTCCCTCACAGGTAAAGCCAGTACGGGCGAGCCCATAGTCAATGCCATCAACGGTGACTCTGCACTCATCGGAGGAGTGATCGCGGTGGTGATCTTCGTCAGTCTCTCAGCTCTGGCGGTAACAGCGAGATTTCTCTACCGACGGAAAGAAACCTTTCAAAGCCAGGAGCCCAAAGCTGGAAAAACTGACGACAGTCCTGAAACGCCATTCAACACGGATCCAAACTCACAGAGCATCATCAGCGATAACCAAAAAGAATACTTCATATGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-51 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CNTNAP4 (contactin associated protein family member 4).

Ensembl:

ensembl_id ENSDART00000097695

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003604 lncRNA upstream 240555 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00003603 lncRNA upstream 240555 1982550 ~ 1991468 (+) True XLOC_001804
TCONS_00005669 lncRNA upstream 240860 1966857 ~ 1991163 (+) False XLOC_001804
TCONS_00005806 lncRNA upstream 311003 1904355 ~ 1921020 (+) True XLOC_001803
TCONS_00005668 lncRNA upstream 518788 1698065 ~ 1713235 (+) True XLOC_001799
TCONS_00005807 lncRNA downstream 8517 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00005808 lncRNA downstream 8517 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005809 lncRNA downstream 105742 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005670 lncRNA downstream 583744 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005810 lncRNA downstream 868787 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00003602 mRNA upstream 331361 1899595 ~ 1900662 (+) True XLOC_001802
TCONS_00003601 mRNA upstream 338928 1849874 ~ 1893095 (+) True XLOC_001801
TCONS_00003600 mRNA upstream 339877 1849874 ~ 1892146 (+) False XLOC_001801
TCONS_00003599 mRNA upstream 547141 1681518 ~ 1684882 (+) True XLOC_001798
TCONS_00003598 mRNA upstream 556661 1668106 ~ 1675362 (+) True XLOC_001796
TCONS_00003608 mRNA downstream 135246 2529037 ~ 2550378 (+) True XLOC_001808
TCONS_00003609 mRNA downstream 175002 2568793 ~ 2575387 (+) False XLOC_001809
TCONS_00003610 mRNA downstream 175126 2568917 ~ 2575387 (+) True XLOC_001809
TCONS_00003611 mRNA downstream 188463 2582254 ~ 2585625 (+) True XLOC_001810
TCONS_00003612 mRNA downstream 193443 2587234 ~ 2595731 (+) True XLOC_001811
TCONS_00003597 other upstream 566985 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 1426664 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 1724767 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 2020076 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003616 other downstream 294774 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 591253 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 1014992 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 2099486 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 2592259 4986050 ~ 4987483 (+) True XLOC_001850

Expression Profile

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