RNA id: TCONS_00035886


Basic Information

Item Value
RNA id TCONS_00035886
length 2611
RNA type mRNA
GC content 0.47
exon number 14
gene id XLOC_018218
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33948642 ~ 33966148 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAATGCCTGGACTTACCATTACAACATCGACAGTAAGTTGGACTGGACAGCAGCTCGTCAGTGGTGTCAAACGCATTTCACGGATATGGTGGCCATCCAAAACCAGGCAGAAATTGCATACCTCAACGAAATCCTCCCCTTCCATCGGGCATACTACTGGATTGGCATTAGGAAGATTGACGGCCATTGGACATGGGTTGGGACCAAAAAGCGCTTGACCGTCGAAGCAGCAAACTGGGCGACAAATGAACCGAATAACCAGGGGACTGGAGAAGACTGTGTGGAGATTTACATCAAGAGGAACAAAGACACTGCCAAGTGGAACGACGAGAGGTGCAGCAAGAAGAAAGCAACTGTGTGTTATTTAGCCTCTTGCACTGAGATATCCTGCAGTGAGCATGCTAGGTGTGTGGAGACTATTGGGAACTACACATGTCAATGTGACGCTGGATTCATGGGTCCACGCTTTGTCCAGTGCCAGCCAGTTGAAAACCCACAGCAAGGTCTTGTGAAGTGTGACGGCGCCTTTGGAGAGTTTAACTTTAACTCATCATGCCAGTTCCAATGTGCCACTGGTTTCAATCTGGTGGGGGCAGAGAGGATACACTGCTTGACAACAGGACATTGGAACGACACCCTTCCTGTTTGTCAGGCTGTCAAATGTCAGGCAATCATTGATGCCCCTCGTGGTTGGACAATGATCTGCACTCATCCGCTTTCCATGAATAGCTTCAACTCCAGCTGTGAGTTTGAGTGTAAGGAGGGTTTTGAGCTCAATGGTTCAAAGACAACCTGGTGTGACCACACTGGCCACTGGACAGACAAAGCCCCCACTTGCACAGTGGTGACCTGTAATCCCCTCCTGGCCCCTGCAAATAGCAGTTTGGCCTGTGCTGATCCACTGGGAAAATCCTCCTTCCGTTCTTCTTGCAATGTTACCTGTGATGAGGGATACAAACTAAGAGGAAGAGCCGCACTAACCTGCCAGAGAGAAGGCAACTGGTCAGCACCATTGCCTGTATGTGAAGTGGTAAAGTGTGACTCACTGAAACCCATCGCGAACGGCTCCTACCAATGTCATGACTCTGTCGATGAGTTTTCTTATGGCTCCACTTGTTGGTTTAAATGTGATTCTGGTTTTGTCCACAATGGTACAAATTCCACTCACTGCACCAAACAGGGGAACTGGAGTCATATATCACCTATTTGTCATGCTGTACAGTGTCCTCCTCTCTCTGATACACCAAAATATGGAAGTGTGAGCTGTGTACACCCCCTGTCTACCAATAGCTACAACTCCAGCTGTGAGTTTAAGTGTGAGGAGGGTTTGGTGCTCAGAGGCACAGATTCCACTCATTGTGATCACACTGGGCACTGGACAAACACAGCACCTATTTGTACAGCTGTTGCTTGTGACCCTCTCGTGACCCCTGTGAATAGCAACCTGACCTGTGCCAATCCATTAGGGAAGTTCTCTTTTCGTACTTCTTGTGAGGTTATTTGTGAGGTGGGATACAAACTCAGAGGAGATACAACACTCAACTGTCTGAGTAATGGCAACTGGTCAGCACCAACGCCTGCATGTAAAGTCATAAGATGTGAAGCTCTGGAGTCTGTTCATCATGGTTCTGTACACTGTCATGACCTGCTGGAGGAGTTCAGCTATGGCTCTGAGTGCTGGCTTGAGTGTGAAGCTGGATTTACTTTGAATGGAACTAATTCCACTTACTGCACCTCACAAGGGAAGTGGAAGCAGGAGCTTTCTGTCTGTCAAGCACAGCAGTGCAGCTCATTAACTGACCCCTCTCATGGTAGTTTAACCTGCACACATCCCCATGGACAGTTCAGCTTTGGTACAGTGTGTGAAGTAAGCTGTCAGGCAGGCTTCAAACTGCACGGCACACCCAAAATGGAGTGTTTGGAGATGGGGAAGTGGACAGACACCCCACCCTTTTGCTTGGcTCAAGAGTGCCCTCTTTTGAGCGCTCCAGAAAATGGCTGGATGAATTGCTCTCATCCTCACTCTCTGTTTAGCTATGAATCCCAGTGTCTTCTGGGGTGTGAGACTGGCTTTGAGTTAACAGGAGAGCcagatatacagtgctcagcttcTGGGAACTGGAGTCAGGAGATGCCTTCGTGTGCTGTTGTTCATTGTGAGCCCCTCTGGCTTACTCATCTTTCTGATCTGGGACCTCCACCCTCAATGAACTGTTCTCACCCCCATGGAAACTTTAGCTTTGGATCTCAGTGTATGTTCTGGTGTGCAAACAGTCATGAGCTCAATGGAACCAGTCAGCTTGTCTGCACCTCCAATGGGTACTGGACTCATTCACCACCCATTTGTGTTGTAAAGGAGATGTCAGTGAGTGCCAGTATGCTGATATATGCTGCTGTGGGAGCTGTTTCTTCAGCTGGTTTACTTTTACTGGGTGGACTTATATTTTTGTTGACTCGCCAAATCACCAAAAAAGCTCATTACAGTCTGAATAAATCCTCATTGGAAGGAGACTTAAACCTGgcatttgaattaaattaaatctatgtCAATTCCTACTAAATGAaattgttcatgttgttttgtacttgcaataaatgaattaatacgTG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0035701 hematopoietic stem cell migration biological_process
GO:0097241 hematopoietic stem cell migration to bone marrow biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko04613 Neutrophil extracellular trap formation
ko05171 Coronavirus disease - COVID-19
ko05150 Staphylococcus aureus infection
ko05144 Malaria
ko05417 Lipid and atherosclerosis
ko04515 Cell adhesion molecules
ko04090 CD molecules
ko00536 Glycosaminoglycan binding proteins
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-110107-2 Predicted to enable oligosaccharide binding activity and sialic acid binding activity. Acts upstream of or within hematopoietic stem cell migration to bone marrow and hemopoiesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in head; trunk; and vascular cord. Human ortholog(s) of this gene implicated in IgA glomerulonephritis; atopic dermatitis; cerebrovascular disease (multiple); and coronary artery disease (multiple). Orthologous to several human genes including SELP (selectin P).

Ensembl:

ensembl_id ENSDART00000133081

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036892 lncRNA downstream 213368 33734853 ~ 33735274 (-) True XLOC_018215
TCONS_00036891 lncRNA downstream 220269 33725892 ~ 33728373 (-) True XLOC_018214
TCONS_00036890 lncRNA downstream 226437 33720994 ~ 33722205 (-) True XLOC_018213
TCONS_00036889 lncRNA downstream 226695 33720994 ~ 33721947 (-) False XLOC_018213
TCONS_00036888 lncRNA downstream 231574 33713540 ~ 33717068 (-) True XLOC_018212
TCONS_00035888 lncRNA upstream 1772 33961587 ~ 33962059 (-) False XLOC_018218
TCONS_00036893 lncRNA upstream 1772 33961587 ~ 33962870 (-) False XLOC_018218
TCONS_00036894 lncRNA upstream 52786 34012601 ~ 34014006 (-) False XLOC_018220
TCONS_00035895 lncRNA upstream 82188 34042003 ~ 34045225 (-) True XLOC_018221
TCONS_00036895 lncRNA upstream 172755 34132570 ~ 34147468 (-) False XLOC_018224
TCONS_00035884 mRNA downstream 38770 33840656 ~ 33909872 (-) True XLOC_018217
TCONS_00035883 mRNA downstream 83838 33809434 ~ 33864804 (-) False XLOC_018217
TCONS_00035882 mRNA downstream 158639 33752967 ~ 33790003 (-) True XLOC_018216
TCONS_00035875 mRNA downstream 243598 33601046 ~ 33705044 (-) False XLOC_018209
TCONS_00035877 mRNA downstream 243889 33649543 ~ 33704753 (-) False XLOC_018209
TCONS_00035889 mRNA upstream 3013 33962828 ~ 33966148 (-) True XLOC_018218
TCONS_00035890 mRNA upstream 9615 33969430 ~ 33976937 (-) False XLOC_018219
TCONS_00035891 mRNA upstream 11589 33971404 ~ 33976305 (-) True XLOC_018219
TCONS_00035892 mRNA upstream 52756 34012571 ~ 34028969 (-) False XLOC_018220
TCONS_00035893 mRNA upstream 64374 34024189 ~ 34028967 (-) True XLOC_018220
TCONS_00035881 other downstream 247409 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 260043 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 262262 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035876 other downstream 291073 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035866 other downstream 473157 33471221 ~ 33475485 (-) True XLOC_018202
TCONS_00035911 other upstream 743262 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035933 other upstream 1551050 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 1581467 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3970872 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 4558882 38518697 ~ 38522649 (-) False XLOC_018280

Expression Profile

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