RNA id: TCONS_00035890


Basic Information

Item Value
RNA id TCONS_00035890
length 4369
RNA type mRNA
GC content 0.41
exon number 17
gene id XLOC_018219
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33969430 ~ 33976937 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGTACAGAACTACAAACTACAGAAAGGACCATAAACAGGACCACTGCAGAACATCACTGATAATGgaCATTTGCAACAAGTTGCAGTTCTTTGCTTCGTTTGTTCTTATCTCTTCAGCGCTAAACTTATGGAGATGCAGTGAAGGTTGGTCATACCACTACTCAGACTCCACCATGACATGGCAAAATGCCAGAAACTGGTGCAGGCAGCACTACACCGACTTGGTGGCCATCCAGAACAAAAATGAGATTGCTCACCTCAACGGAATTCTTCCAAGACGCAATGGCTATTACTGGATTGGTATTCGTAAAATTAATAACCAGTGGACCTGGGTGGGAACTAACAAAACACTTACTGCTGAAGCTGAAAACTGGGCAGAAAAGGAGCCCAACAACAAAGGAAATAATCAAGACTGTGTGGAAATATATATTCAAAGAGAGAAAGATGAAGGTAAATGGAATGATGAATCCTGCTCAAAATCAAAGACAGCGTTGTGCTACACGGCTTCCTGCGCGAGTGACTCCTGTGTCAGTGGTCATGGAGAGTGTGTAGAAACCATAAACAGTCATACATGCTCATGCTTTGAAGGCTTCTATGGAAAAGTATGTGAAAATGttgttaaatgtgaaCCAAATGAAGTCAATGCATTGGATCATTCTAGTAAGCAGTGCTCTCATCCTCATGGAAACTTCGCATATGACTCTCAGTGTGAATATTCATGTGAGGAGGGTTATGAACTGAAGGGTTCCAGTACAACGAGATGCAATTTTACAGCGGAGTGGACAAGCAAACCACCATCTTGTGAGCTTGTTCAATGCCCACAGCTGAACAAACCACTGAAAGGTGGCATGCAGTGTAATCATCCGATGGGTCAGTTCAGCTATCAGTCCagctgtgagtttgtgtgtgatgAAGGATACAAACTGCGAGACTCCAGCTCTTCTACTCTGATCTGTGGAGCAACGGGACACTGGAATGATTCACAGCCCACTTGTGAAATAGTAAAATGCAAAGCAAAGGATATCACCCCACCAGCTCATGCTAAAGTCCACTGCACTAATGAAGATATACCCTATAAATCTCAGTGTGAATATTCCTGTGAGGAGGGTTATGAACTAAAGGGTTCAAGTACAACAACGTGCACTTCAACAACAGAGTGGTCAAGTGAACCAACAACCTGTGAACTTGTTCAATGCTCAGAGTTGGCCAATCCACAGAAAGGTGGCATGCAATGTAATCATCCGATGGGTCAGTTCAGCTATCAGTCCagctgtgagtttgtgtgtgatgAAGGATACAAACTGCAGAACTCCAGCTCCTCTACGCTGATCTGTGGAGCAACGGGACTCTGGAATGATTCACAGCCCACTTGTGAAAttgtaaAATGCAAAGCAAGGGATCTCACCACACCAGCTAATGCTAAGGTCCACTGCACTAATGAAAATATACCCTATGAATCTCAGTGTGAATATTCCTGTGAGGAAGGTTATGAACTAAAGGGTTCAAGTACAACAATGTGCACTTCAACAACAGAGTGGTCAAACGAACCACCAACCTGTGAACTTGTTCAATGCCCAGAGCTGGCCAAACCACTGGAAGGTGACATGTATTGTAATCATCCGATGGGTCAGTTCAGCTATCTGTCCAGCTGTACGTTTGTGTGTGATGAAGGATACAATCTGCGAGACTCCAGCTCCTCCACTCTGATCTGTGGAGCAACGGGACACTGGAATGATTCACAGCCCACTTGTGAAATTGTAAAATGCAAAGAAGAGGATATCACACCACCAGCTCATGCTAAAGTCCACTGCACTAATGAAGATATACCCTATGAGTCTCAGTGTGAATATTCCTGTGAGGAGGGTTATGAACTAAAGGGTTCAAGTACAACGACGTGCACTTCAACAACAGAGTGGTCAAGTGAACCAACAATTTGTGAACTTATTCAGTGCCCAGCCCTTGATAATCTTGTCAATGGAGATCTCAGCTGCAATTCAAGCTTTAGTTATGGGAGTAAATGCAGCTTCAGTTGTGCAGAAGGATTCATTCTCCAGGGAGCTTCAGAGATCAGCTGTACAAATACAGCAGAGTGGAGTCAGAAACCACCTCACTGTGAAGCTGTGGTTTGTCCTCAACTTTCTGACCCAGCAAATGGGTACACAAACTGTTCATCTGATGAACCCTTCTTTGGCACCATCTGCAACTTCATCTGTTTTGATGGCCACCAGCTTGACAGTAATGAGACAGTGATGTGCAGCCATGATGGGAGATGGTCAGGGGAAGTGGCGGTATGTCAAGCTCAACCTGGTCCCTCTAAATCGCTCTTCAAAGCAACAGAAGTGGCTCTTGGCGTTGCAGGAACTGTCGGCAGCTCCAGTCTGTTCTTAGTCTACTGGATACTGAAGAAACTGAAGAGTAACGctaACAAGTTTAAACTGAACAGcACTTTGGATACTGTGGATCCACCGCAGGCTTATAAGAGCAGTATTGACAGTCTCCTATAGAGCAAAAGTGCTTCAAACTACACTGATCTTATATGGCTGTAGTGGAAACACTTCAGAAGATATTCTTTATCCAGTATGATGGGCATTTTCCATGCAGACTGCAGTCCCTAAATTAATGTGATTTCTACTTCCCAATGGAAGCATTATTTACTTGAGTTGAACATATTGTTCTTTACTGTTTAACCCTCTGAGGATGTTTTGGGGGGGACAAGAGGAGTTCTGAAGTGCCCTGACACTTGTGCTTTTATCAGTTTCTTATGAACATATAATTTGCTAAAGTCtattaacactgtaaacagcacaaagtGAGCTACAATATTTTAGCAATATTTATGTACATGATTGTGTTGTTGAAAAGGAAACGTTTATGCATGGTTggtgaaaataataaatgttgaagtcacTGAAATAACTCCATAAAACACATACATAATTTTGTAGCCTAGAGCTTTTGCTTCAAAATTATGTGatcatattgtttgtttgttttcaggaaACAATAAATTGATTTAAGTCAGGGGTATCCAGGCTCAGCCCTGGAGGACCactgtcctggagagtttagctccaacccaaattaaacacacctgaaccagctaatcaagctcttattagatatactagaaattttctgacaggtgtgttgaagcaagatggagctaaactcagccGGATactagccctccaggaccaacttGGTACACCCCTCaataaagtgaagtttatttataaactaatttcgagaggatcatgtgcttatgattgtccacagcTGGTCCAGCATTGGCTAatacatgattcaccaatcagatgattcctaacctGCTATAAATAACCAAAATGTCTTACCTCagtatcttcgttttgaagaatccctcctcccacccctactccccctcctttctagattgggcactgttgccttacagcaaaaatGTTACTGGTTAAAGTCCCAACtgaaccagttgacatttctgtgtggagtttgcttgttctccccgtacTTGCATgtgtttcccctgggttcctccCACAGTCCTAAATTGAACATTCTAAATTGGTATCATAGTCGAACGCTTAGTAAGCCATATATCTCTCTTTAGCCATTCCTTTATTTGTTATTAGCCAGAATTAAGTTGGGGGAGTTCAtctagatctacctgagctcaaactcccctctagcTCTgttaatgggagggagcccagggctcgaggatcttataagctcagagctctctacagggacagcatgccaaataagctttttaatcaatcatcagctaaatgtgaacttCTGAAATATTCTAAGAAACTTTTTGGGTGGAAAGGATCTATGCGAGGAGATCATGCAGTGattcacacctgagaagacaaatACTTGCATAATGAGTTGCATAATGGACCATCCAGATAGGTAGATAACTGAGAGGGGAGAGTCATAAGAAAGACTGTGAGGAGgacaaaataagtttaaaatatttatatacatttatgatGTTTTAGTTTACTGAGAATATCAATAGCTTTCACACAAAATAACTTGATATGCACTTTGAGTGCAGTTTAACGCTTTATTGTGCatattgttttgttgtaattatgaatagaAATATAGGCCCTTTACGGCTGTGTTTTTCTTATCAGGACTAAAAAAATGAGAGTATTTTAAGCTCCTTTTTTGTCATCACATAGAAAAGTGCTAAAACACATATAGCCTATACATTTGCCAACCCCAGGGagtgtaatatatattttcatattaattctgtgttaaagaaaacatttttgtactatttatttagcaaaaactGTAGCTGTCTGATTACTATTTGTAAAGTTCAATAAAGTTTTGCTTTCATTGA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
ko04668 TNF signaling pathway
ko04514 Cell adhesion molecules
ko05144 Malaria
ko05143 African trypanosomiasis
ko05417 Lipid and atherosclerosis
ko05418 Fluid shear stress and atherosclerosis
ko04933 AGE-RAGE signaling pathway in diabetic complications
ko04515 Cell adhesion molecules
ko04090 CD molecules
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-041014-221 Predicted to enable oligosaccharide binding activity and sialic acid binding activity. Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; leukocyte tethering or rolling; and response to cytokine. Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in intermediate cell mass of mesoderm; posterior cardinal vein; and trunk. Human ortholog(s) of this gene implicated in IgA glomerulonephritis; brain ischemia; cerebrovascular disease; and coronary artery disease. Orthologous to human SELE (selectin E).

Ensembl:

ensembl_id ENSDART00000136834

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036893 lncRNA downstream 6560 33961587 ~ 33962870 (-) False XLOC_018218
TCONS_00035888 lncRNA downstream 7371 33961587 ~ 33962059 (-) False XLOC_018218
TCONS_00036892 lncRNA downstream 234156 33734853 ~ 33735274 (-) True XLOC_018215
TCONS_00036891 lncRNA downstream 241057 33725892 ~ 33728373 (-) True XLOC_018214
TCONS_00036890 lncRNA downstream 247225 33720994 ~ 33722205 (-) True XLOC_018213
TCONS_00036894 lncRNA upstream 35664 34012601 ~ 34014006 (-) False XLOC_018220
TCONS_00035895 lncRNA upstream 65066 34042003 ~ 34045225 (-) True XLOC_018221
TCONS_00036895 lncRNA upstream 155633 34132570 ~ 34147468 (-) False XLOC_018224
TCONS_00035899 lncRNA upstream 155633 34132570 ~ 34147596 (-) True XLOC_018224
TCONS_00035900 lncRNA upstream 174796 34151733 ~ 34153001 (-) True XLOC_018225
TCONS_00035889 mRNA downstream 3282 33962828 ~ 33966148 (-) True XLOC_018218
TCONS_00035887 mRNA downstream 7733 33948642 ~ 33961697 (-) False XLOC_018218
TCONS_00035886 mRNA downstream 9615 33948642 ~ 33959815 (-) False XLOC_018218
TCONS_00035884 mRNA downstream 59558 33840656 ~ 33909872 (-) True XLOC_018217
TCONS_00035883 mRNA downstream 104626 33809434 ~ 33864804 (-) False XLOC_018217
TCONS_00035892 mRNA upstream 35634 34012571 ~ 34028969 (-) False XLOC_018220
TCONS_00035893 mRNA upstream 47252 34024189 ~ 34028967 (-) True XLOC_018220
TCONS_00035894 mRNA upstream 62344 34039281 ~ 34069956 (-) False XLOC_018221
TCONS_00035897 mRNA upstream 107394 34084331 ~ 34090740 (-) False XLOC_018222
TCONS_00035896 mRNA upstream 107394 34084331 ~ 34090740 (-) True XLOC_018222
TCONS_00035885 other downstream 17740 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 268197 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 280831 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 283050 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035876 other downstream 311861 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035911 other upstream 726140 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035933 other upstream 1533928 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 1564345 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3953750 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 4541760 38518697 ~ 38522649 (-) False XLOC_018280

Expression Profile

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