RNA id: TCONS_00036894


Basic Information

Item Value
RNA id TCONS_00036894
length 230
lncRNA type sense_over
GC content 0.35
exon number 2
gene id XLOC_018220
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34012571 ~ 34028969 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaaagacagCATGATGGACCTCAATATGCTAAATTCTATAAAGAATATTCAGTCTGTTGCACATAACCAGGAAATAGACCCACATTTAATGATAATTATTTGTGCCATAGAGCTTTTACGTTCAGCGAGCGTTAGAGGACTGAGAGCATCAACTCTCAGAAGAAATATATAGACTCTAATATGTGTTCACTAGAGGTGAGACCCTgacataatttatttgtattatcag

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036893 lncRNA downstream 49731 33961587 ~ 33962870 (-) False XLOC_018218
TCONS_00035888 lncRNA downstream 50542 33961587 ~ 33962059 (-) False XLOC_018218
TCONS_00036892 lncRNA downstream 277327 33734853 ~ 33735274 (-) True XLOC_018215
TCONS_00036891 lncRNA downstream 284228 33725892 ~ 33728373 (-) True XLOC_018214
TCONS_00036890 lncRNA downstream 290396 33720994 ~ 33722205 (-) True XLOC_018213
TCONS_00035895 lncRNA upstream 27997 34042003 ~ 34045225 (-) True XLOC_018221
TCONS_00036895 lncRNA upstream 118564 34132570 ~ 34147468 (-) False XLOC_018224
TCONS_00035899 lncRNA upstream 118564 34132570 ~ 34147596 (-) True XLOC_018224
TCONS_00035900 lncRNA upstream 137727 34151733 ~ 34153001 (-) True XLOC_018225
TCONS_00036896 lncRNA upstream 487764 34501770 ~ 34502671 (-) True XLOC_018229
TCONS_00035890 mRNA downstream 35664 33969430 ~ 33976937 (-) False XLOC_018219
TCONS_00035891 mRNA downstream 36296 33971404 ~ 33976305 (-) True XLOC_018219
TCONS_00035889 mRNA downstream 46453 33962828 ~ 33966148 (-) True XLOC_018218
TCONS_00035887 mRNA downstream 50904 33948642 ~ 33961697 (-) False XLOC_018218
TCONS_00035886 mRNA downstream 52786 33948642 ~ 33959815 (-) False XLOC_018218
TCONS_00035893 mRNA upstream 10183 34024189 ~ 34028967 (-) True XLOC_018220
TCONS_00035894 mRNA upstream 25275 34039281 ~ 34069956 (-) False XLOC_018221
TCONS_00035897 mRNA upstream 70325 34084331 ~ 34090740 (-) False XLOC_018222
TCONS_00035896 mRNA upstream 70325 34084331 ~ 34090740 (-) True XLOC_018222
TCONS_00035898 mRNA upstream 107812 34121818 ~ 34127415 (-) True XLOC_018223
TCONS_00035885 other downstream 60911 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 311368 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 324002 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 326221 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035876 other downstream 355032 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035911 other upstream 689071 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035933 other upstream 1496859 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 1527276 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3916681 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 4504691 38518697 ~ 38522649 (-) False XLOC_018280

Expression Profile

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