RNA id: TCONS_00035893


Basic Information

Item Value
RNA id TCONS_00035893
length 682
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_018220
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34012571 ~ 34028969 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGGAAGTTGTTTTTCGTGCCATTTTTGATCTGGTCTGTCACAAATCAATTGGTTCGTTGGCGAGAAAATGAATTCAAAGTGTTTGTCCGCTTGGTCCAAGTTAAAGTAGAGCAAACGCGGACAGTTTTTGCAATCATGGTGTCTGCGGGAAAGGAAAACGGGTATTCATAAGCAGCACGTTTCCTGCGAGGTGACACCGACATACAGGCAGACGATACCAACTCAGGATGGGTGCCGAGAGCAGTGCCCTGCCAAGCTGTGTGCTGGAGGAGCCACTGCTGACGCTGCCCTCTGGTCTCACCATGTTCTCTGCCCTCCTCCGGGATGGCAAGCCTGCCTCTGTGTTTGTACATAAGCAAGACAATGAAGACAAAGTCAATAAAGCTGCCAAGCATTTGAAGACATTAAGGCATCCGTGTCTTCTTCGCTTCCTGTCATGTTCAGTGCAGGATGGAGGCATACACTTAGTGACAGAGCCAGTTCAACCATTAAAACGGCTGCTAGACAATCTTTCTGCTGAGGAGATCTGTGCAGGCCTCTATGACCTGCTGCAAGCACTAGTCTTTTTACATGACCGGGGCAAATCAAGTCACAACAATGTGTGCATATCCTCAGTTTTTGTCGGTGAAGATGGTCATTGGAAGCTTGGTGGGATGGAGACTGTCTGCAAGTTTTCAGAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-030131-2559 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human SCYL3 (SCY1 like pseudokinase 3).

Ensembl:

ensembl_id ENSDART00000153408

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036894 lncRNA downstream 10183 34012601 ~ 34014006 (-) False XLOC_018220
TCONS_00036893 lncRNA downstream 61319 33961587 ~ 33962870 (-) False XLOC_018218
TCONS_00035888 lncRNA downstream 62130 33961587 ~ 33962059 (-) False XLOC_018218
TCONS_00036892 lncRNA downstream 288915 33734853 ~ 33735274 (-) True XLOC_018215
TCONS_00036891 lncRNA downstream 295816 33725892 ~ 33728373 (-) True XLOC_018214
TCONS_00035895 lncRNA upstream 13036 34042003 ~ 34045225 (-) True XLOC_018221
TCONS_00036895 lncRNA upstream 103603 34132570 ~ 34147468 (-) False XLOC_018224
TCONS_00035899 lncRNA upstream 103603 34132570 ~ 34147596 (-) True XLOC_018224
TCONS_00035900 lncRNA upstream 122766 34151733 ~ 34153001 (-) True XLOC_018225
TCONS_00036896 lncRNA upstream 472803 34501770 ~ 34502671 (-) True XLOC_018229
TCONS_00035890 mRNA downstream 47252 33969430 ~ 33976937 (-) False XLOC_018219
TCONS_00035891 mRNA downstream 47884 33971404 ~ 33976305 (-) True XLOC_018219
TCONS_00035889 mRNA downstream 58041 33962828 ~ 33966148 (-) True XLOC_018218
TCONS_00035887 mRNA downstream 62492 33948642 ~ 33961697 (-) False XLOC_018218
TCONS_00035886 mRNA downstream 64374 33948642 ~ 33959815 (-) False XLOC_018218
TCONS_00035894 mRNA upstream 10314 34039281 ~ 34069956 (-) False XLOC_018221
TCONS_00035897 mRNA upstream 55364 34084331 ~ 34090740 (-) False XLOC_018222
TCONS_00035896 mRNA upstream 55364 34084331 ~ 34090740 (-) True XLOC_018222
TCONS_00035898 mRNA upstream 92851 34121818 ~ 34127415 (-) True XLOC_018223
TCONS_00035901 mRNA upstream 128341 34157308 ~ 34292607 (-) False XLOC_018226
TCONS_00035885 other downstream 72499 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 322956 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 335590 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 337809 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035876 other downstream 366620 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035911 other upstream 674110 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035933 other upstream 1481898 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 1512315 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3901720 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 4489730 38518697 ~ 38522649 (-) False XLOC_018280

Expression Profile

//