RNA id: TCONS_00035897


Basic Information

Item Value
RNA id TCONS_00035897
length 2335
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_018222
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34084331 ~ 34090740 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGCATGAAGGACAAGCTAATAGTGATAGTGACCACGTAACAGCTCGCAGAAAGAGACACACTCGGACGACACTAAAAGATAATCAAAAGATAATAATGTCTGACAGAATCGTTGACGAGGATCCAGTGACAGTAACTCACACAGGGCCCAAGGGTGTCATCAATGACTGGCGTAAGTTTAAACTGGAGAGCATGGACCAGGAGGCTCTGCCACCCAATAAGAGGGAGCTGCTAAGACAGATGTCGTCCCCACAGAAACCCAAAGACTCCTGCGTGGGTGGACTGAATCGCAAGATGAGCGCTCAGGAATATGAACTGATAAAGGAAGAAGACGAGAAAAGCCTGCGCAAGTACCGTAAGCAGTGCATGCAAGAGATGCACGAGCGCCTGAGCTTCGGGCCCAAATTCGAGGGCGTTTATGACCTTGACAGTGGCGAGGCCTTTCTGGAGGTCATTGAGAAGGAGCACCGGCTCACAGTGGTGGTGGTGCACATCTATAAAGATGGAGTGCCGGGCTGCGAGGCTCTTAACAGTTCATTGGATTGCTTGGCCACCGAATATGCCAGCGTTAAATTCTGCCGCATCTGCGCATGCGATACTGGAGCCGGCGATCGTTTCTGCGATGATGTGCTGCCTGCCTTGTTAGTGTACAAGGCTGGAGAGCTGCTGGGGAACTTCCTGGCTGTCACGCAGCATTTCAGCGAGGAGTTTTTTGCTACCGATGTCGAGGCCTTCCTCAATGCGTATGGACTGCTGCCAGAGAAGGAGTGTGGCCCTGGAGCTGAGGAGGATGAAGCTGATGTGGAGTGATGAAAGACAGCATGGTGAAAGAATGAATGAGAAGAATGCGTTCGAGCATCTGACGAGAATAAGTTTCATTATTCTTCCAGCTACGATGAAATGAATTGGAGCGTGCACGTATGGCTTAACAAGATCTCTTTAGCATGCTAGAGAAAACTACTGGAAAGCAACATGGAATGCAATCAAGTCAAGTCGTCTTTGTTTCTAgagcgctttttacaatgtagatcatgtCAAAGCAGGTTaacatagatgaagaaaagagaACGAAAAGCCATAACATTGTTTCAGATTGTGGAGCAATGCAGCATAtcacccagcaaacaattttgtttaatggacgtctaatagacatctaaacatagacatcttggctaaaacaaggctaaacgtGCAGCTGTCAGTGAAAAACTAATATACATTTGAGAATAGCCCAAAGCTAGACTAGTTGTCAaatagattagacagactttatatgtgtggtcattcatttctgtttatttggcctattcttagacgtctattagattttcactgacagcccatgtttagccttgttttagccaagatgtccATTTAGACAactctattagacatcttttaaaatcaaaaaaaGGCTTGCTGGCCATGCAGGCAGGAGAGTATTGTAAAATGCTGGTGTAGTTAAATTAAAGCTGATTCAATTCAGTGTAATGCAAAGTCACTGCCGAAAGCCCCTGAAGAGCAGCTCTACCATAGACACAGAGGCAACAGTGGCAATGAACCAAAACTCAAGATGAATAATGAGACATCATGCCAAGTACAATGTGATCCTGGATTGATATCTATCTTAATcttggaacatcatttttgttcgaaaatgtaatccatacctattcaccacccctaaacccaaccataactgtaaatgatTCCCAAagtcagaggggaataatagttggataactaaaatcccttaattctgattttctgattggaatgttgttccaggattaacatagatgttaatccaggtacatttcctacttggtgaaatcaggttggcggtTTTCACCAGGTGCATCTCACAAGGAACAATTTCAttgatgatttttaaaaggaggtgtgccCCCAAACCCCATCATTGGGGGAAGGAAAAccataaaatgtacaaatgatatcgtataaatgaatattagtcattaaatcaaaaagttacgaattgccatgagattgtgttggcttttTCATATAAACACAACTGGATGAATGTCAAATTAGATGAGAATGAATTAGTCTTATGTGGAGTACTTGTGTACATGTGACTGCACGTTGCAAACGATTATGCAAATTTTCAAATGGTTTCCAAACTGCGACTTGCTTCTTAAACTACGCATGCCCATTTTTTATTCTGCTCTGTATAGAAATAGTTTCAAGCTGTTTCTTGAGTAGGGTTTGATTGGTTTGCATGCACAAGCTGTCTTACTGTAAAAAGATTGTGATGTAAGCTGTGCTTTTAGAcgtgcataaataaatgaaaatggaaACATTAAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-031023-2 Predicted to act upstream of or within regulation of G protein-coupled receptor signaling pathway and visual perception. Orthologous to human PDC (phosducin).

Ensembl:

ensembl_id ENSDART00000062539

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035895 lncRNA downstream 39106 34042003 ~ 34045225 (-) True XLOC_018221
TCONS_00036894 lncRNA downstream 70325 34012601 ~ 34014006 (-) False XLOC_018220
TCONS_00036893 lncRNA downstream 121461 33961587 ~ 33962870 (-) False XLOC_018218
TCONS_00035888 lncRNA downstream 122272 33961587 ~ 33962059 (-) False XLOC_018218
TCONS_00036892 lncRNA downstream 349057 33734853 ~ 33735274 (-) True XLOC_018215
TCONS_00036895 lncRNA upstream 41830 34132570 ~ 34147468 (-) False XLOC_018224
TCONS_00035899 lncRNA upstream 41830 34132570 ~ 34147596 (-) True XLOC_018224
TCONS_00035900 lncRNA upstream 60993 34151733 ~ 34153001 (-) True XLOC_018225
TCONS_00036896 lncRNA upstream 411030 34501770 ~ 34502671 (-) True XLOC_018229
TCONS_00036897 lncRNA upstream 424768 34515508 ~ 34536019 (-) True XLOC_018230
TCONS_00035894 mRNA downstream 14375 34039281 ~ 34069956 (-) False XLOC_018221
TCONS_00035892 mRNA downstream 55362 34012571 ~ 34028969 (-) False XLOC_018220
TCONS_00035893 mRNA downstream 55364 34024189 ~ 34028967 (-) True XLOC_018220
TCONS_00035890 mRNA downstream 107394 33969430 ~ 33976937 (-) False XLOC_018219
TCONS_00035891 mRNA downstream 108026 33971404 ~ 33976305 (-) True XLOC_018219
TCONS_00035898 mRNA upstream 31078 34121818 ~ 34127415 (-) True XLOC_018223
TCONS_00035901 mRNA upstream 66568 34157308 ~ 34292607 (-) False XLOC_018226
TCONS_00035902 mRNA upstream 67892 34158632 ~ 34292285 (-) False XLOC_018226
TCONS_00035903 mRNA upstream 68184 34158924 ~ 34164278 (-) True XLOC_018226
TCONS_00035904 mRNA upstream 252909 34343649 ~ 34388324 (-) False XLOC_018227
TCONS_00035885 other downstream 132641 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 383098 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 395732 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 397951 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035876 other downstream 426762 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035911 other upstream 612337 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035933 other upstream 1420125 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 1450542 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3839947 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 4427957 38518697 ~ 38522649 (-) False XLOC_018280

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_09614126_09615953.mRNA True 1312 mRNA 0.43 3 CI01000325 9613545 ~ 9615953 (-)