RNA id: TCONS_00035899


Basic Information

Item Value
RNA id TCONS_00035899
length 2236
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id XLOC_018224
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34132570 ~ 34147596 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGTCATTATGGAACACTGGAAGTAGGAATGCTGTTTGTTAAAAAGTAGCATGCGCTGATACAGAAATGTTAATTCAATATGCAATGACAATcatttaacagtagatggcgatAGAACACTTTCAAATATTTGTCTCCCTTTAAACttgtacacacgcacacacacacacacacacatatggctATGTAGCTAGTAAAATCATCGTTTTCCTACGTTTCACACTGTCGCTTGATTTGAAGAAAATGTCTGCTACCGTCGTCAGCACACAGATTAACTGAGGTTGATCCAGACAGACCAGCAACATATGTGACACAGTCCAGAACACCAGAAATATACAAAGCCTTCATAACCCCCGAGAACCCGATCATTGCCCTGAAACCTCCTCCTGAACCCAGGACAGCGATCACTGGAACCTACAAACGCAAGAAAACAGAAGCACAGTAGAATGATAGGAAAATGaactattaattaacattttaaaacccTTATTGTCAAccaaatatttgtacattttttttatggcTGACCTTAGAGTCCCCCCTGCACCCCCAAAGAAATGCATGTCTAGTCTGATTCTGTGCCTGTGTTCTTAGTATAATGTCCACACATTATTTTAATCGTCTCTTCTTGTTTGGAACCTTATTTTACTGCTTTTATTAGTTGTATTGGCCATAATGGACACTTTGTCATAATAGTAATGTAAATTCTGGAAAATTGTTTTAACTTCCTTTACATTGTGACTTGTAGGAACAAGGAAAGTAGGCCAGGTTTAATAACACCGGCTTTGGTAACAGACACATCAAAGAGAAAGATGTCAAATTTGCCAATTGTTGATGCCAAAAGGTTTTGACTAACAGTTAAATAAGTGAATCTAAAGCTTTCAAAAATCATGTAGTGACTACGTGACCAGTCTTGGTCAATTCACCGCCACAAAGGTAGTGTAATTTCTCAGCTATGGTCCACTCACTTTTAATTCTCTTTTTTCATGCTTATGAATACATCCCGTAACACACCAGCTCATGAGTTCTCACATTTCTTATCTAACACTTCCTTTTTAACTTTAGATTATGTCGATTTTCACATCCTCATCCAAGAATGGATGAAATGCGCCAAATAAAACAGTAAGCTGATAATGAAGCAGGCCTGTGACATAATAAAACAGTCAGTCTTTACAGAGCTTAATTTATTTAGAGCTTTAATTGTCAAATATTTTGAGTATTTTGTAATGTCTGTCTGATGTGTCCAAATATCTCATCGAAAATGATTTTGCTAAGGTTATGTGGAAATATGAGCTGTTAGTGCGAGTTTTGCTACAGCAGTGCTACTCAACTGCACCATTTCTCTACTTGTTGGGTCATGAATGTCTTGACTTTCTGCTGTATATCATTAGATATCTCCATCTGTATGACAGCTGCATCAAACAtgtattatatagtttttttcatGTAACCACACCTGTTTCTTATGAAAACAACAGCAATGACGTCACAGTACACCAGAATCAGTGTTATTACAAATGTAAGAATTCTTATGGTGTTTTTAAAGACCAGTAGGGGAAAAGTCAATAAATATATGGTACCTCATGAGGAGAGCAAGGGAGGGAAGAAGGTTTCTCGATGTTCAGCAGTTTCTTGATGGCCAGCATGACTTTGTCTCGTCTGTGTTGTCTGTAGAGCTTTTCTTTAGGACACAGATCCAGATTGAATCGCAGGTCCATCGCTAAGCTGAGAACGGTGAAAAAGTCCAATTTGGGTAGTTTTAACTCTAAACTTTTCATAATATTGTATAGTTTTGTTCATGATGATACATACCACTCCTCCAAGGAAAGTTCTAAAAACACATTGGTCATCTGTGAAACAACAACCACAGGCATTAATACCACAATACAGATCAAGTAAGGAAAAAAGTAAATGTAACATAAATGTACAGCTTTATTATTGGTGCAACTATAAGCAACCcatgtgttttttaaatgaaagcgCTCCTCAAATATTTAACTTCAAATCCTTAGTTTGATTGAACTTACTTTGCCTATTAGGAATGACACCAGCATTGTTTGTCCAACTTTGAGTTTAGAGATGTCATATGAGGCTGTACCCAACGTTTCATCCACAACATAGTTAGCATCCATTAATGTCAGCTTGGAAAcaagaggacaaacacaatacaACTTGATGCGCACATGAAGAGTGTGTGCTTAAAGCCTGATCAACATACACTTGAACACTGTTAAca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035895 lncRNA downstream 87345 34042003 ~ 34045225 (-) True XLOC_018221
TCONS_00036894 lncRNA downstream 118564 34012601 ~ 34014006 (-) False XLOC_018220
TCONS_00036893 lncRNA downstream 169700 33961587 ~ 33962870 (-) False XLOC_018218
TCONS_00035888 lncRNA downstream 170511 33961587 ~ 33962059 (-) False XLOC_018218
TCONS_00036892 lncRNA downstream 397296 33734853 ~ 33735274 (-) True XLOC_018215
TCONS_00035900 lncRNA upstream 4137 34151733 ~ 34153001 (-) True XLOC_018225
TCONS_00036896 lncRNA upstream 354174 34501770 ~ 34502671 (-) True XLOC_018229
TCONS_00036897 lncRNA upstream 367912 34515508 ~ 34536019 (-) True XLOC_018230
TCONS_00036898 lncRNA upstream 498351 34645947 ~ 34650661 (-) False XLOC_018231
TCONS_00035907 lncRNA upstream 499904 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00035898 mRNA downstream 5155 34121818 ~ 34127415 (-) True XLOC_018223
TCONS_00035897 mRNA downstream 41830 34084331 ~ 34090740 (-) False XLOC_018222
TCONS_00035896 mRNA downstream 41830 34084331 ~ 34090740 (-) True XLOC_018222
TCONS_00035894 mRNA downstream 62614 34039281 ~ 34069956 (-) False XLOC_018221
TCONS_00035893 mRNA downstream 103603 34024189 ~ 34028967 (-) True XLOC_018220
TCONS_00035901 mRNA upstream 9712 34157308 ~ 34292607 (-) False XLOC_018226
TCONS_00035902 mRNA upstream 11036 34158632 ~ 34292285 (-) False XLOC_018226
TCONS_00035903 mRNA upstream 11328 34158924 ~ 34164278 (-) True XLOC_018226
TCONS_00035904 mRNA upstream 196053 34343649 ~ 34388324 (-) False XLOC_018227
TCONS_00035905 mRNA upstream 235600 34383196 ~ 34388331 (-) True XLOC_018227
TCONS_00035885 other downstream 180880 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 431337 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 443971 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 446190 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035876 other downstream 475001 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035911 other upstream 555481 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035933 other upstream 1363269 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 1393686 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3783091 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 4371101 38518697 ~ 38522649 (-) False XLOC_018280

Expression Profile

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