RNA id: TCONS_00035905


Basic Information

Item Value
RNA id TCONS_00035905
length 639
RNA type mRNA
GC content 0.38
exon number 5
gene id XLOC_018227
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34343649 ~ 34388331 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTACTGTAGTACAAGCGGTGTGGAGAAgGAAAACAACTAAAGCACAAAACGTTAGTAGATTCTTGAAGTCCTTCAGCGTCACAGAAGACTGTAAGTTGTAAACATTTAGGTGAGTCAAGGGTTTTGGCGATGGCTAGCAAGAaatcaaaaaagaagaaaaacaaaaaggagGAAAAACTCTCAAGTCGTTTATATGAAGATGAGAAGGAGGAGAGAGACACAAAGCGATGTATCAGCTCAAAAAGCAAGCACAAACATCATCATTGTGTAAGTTTTGATAAAGATGAAGCAAAAGGGAGAAGGGCCACTGTCTCATTGCCAGAGAAAACATTTGAAGCAATATTGAACCAAACAGATGCTGGAGAAAGCAAGAGCAAAAAGAAAAGatccaaaattaataaaaacaaaggaacagAGAAATCCAAACCAGTTCTTAATTTGCCTAATAAACATGAGAAAAAATGTGTGAATGCTAAAGACAAGCATAAAAATGCAAGTCCTCAAATCTCTAAAAACAAGGCTAAAAACCAGCCTTCCTCAGAAGAAGCttcaaaaaagagagaaaagttGGTGTCAAGAAAACCGCCATCAGAGGATCTCAGGTGGACACTTGCAAAGGATGACTGTTTAAAACTCC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041015-373 Predicted to be active in nucleus. Orthologous to human SWT1 (SWT1 RNA endoribonuclease homolog).

Ensembl:

ensembl_id ENSDART00000136591

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035900 lncRNA downstream 230195 34151733 ~ 34153001 (-) True XLOC_018225
TCONS_00035899 lncRNA downstream 235600 34132570 ~ 34147596 (-) True XLOC_018224
TCONS_00036895 lncRNA downstream 235728 34132570 ~ 34147468 (-) False XLOC_018224
TCONS_00035895 lncRNA downstream 337971 34042003 ~ 34045225 (-) True XLOC_018221
TCONS_00036894 lncRNA downstream 369190 34012601 ~ 34014006 (-) False XLOC_018220
TCONS_00036896 lncRNA upstream 113439 34501770 ~ 34502671 (-) True XLOC_018229
TCONS_00036897 lncRNA upstream 127177 34515508 ~ 34536019 (-) True XLOC_018230
TCONS_00036898 lncRNA upstream 257616 34645947 ~ 34650661 (-) False XLOC_018231
TCONS_00035907 lncRNA upstream 259169 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00035922 lncRNA upstream 603340 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00035901 mRNA downstream 90589 34157308 ~ 34292607 (-) False XLOC_018226
TCONS_00035902 mRNA downstream 90911 34158632 ~ 34292285 (-) False XLOC_018226
TCONS_00035903 mRNA downstream 218918 34158924 ~ 34164278 (-) True XLOC_018226
TCONS_00035898 mRNA downstream 255781 34121818 ~ 34127415 (-) True XLOC_018223
TCONS_00035897 mRNA downstream 292456 34084331 ~ 34090740 (-) False XLOC_018222
TCONS_00035906 mRNA upstream 32292 34420623 ~ 34453623 (-) True XLOC_018228
TCONS_00035908 mRNA upstream 265585 34653916 ~ 34670236 (-) False XLOC_018232
TCONS_00035909 mRNA upstream 270224 34658555 ~ 34663209 (-) True XLOC_018232
TCONS_00035910 mRNA upstream 314079 34702410 ~ 34711528 (-) False XLOC_018233
TCONS_00035912 mRNA upstream 349407 34737738 ~ 34754617 (-) False XLOC_018234
TCONS_00035885 other downstream 431506 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 681963 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 694597 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 696816 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035876 other downstream 725627 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035911 other upstream 314746 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035933 other upstream 1122534 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 1152951 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3542356 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 4130366 38518697 ~ 38522649 (-) False XLOC_018280

Expression Profile

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