RNA id: TCONS_00035908


Basic Information

Item Value
RNA id TCONS_00035908
length 2254
RNA type mRNA
GC content 0.43
exon number 10
gene id XLOC_018232
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34653916 ~ 34670236 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccAGCCTAGCCTGCAGGTCTACACATTAAACCCGAAACAGTGCTGAGTTTCAATAGACGGTGGCAATAAAACCATGACAACGATCGTCTAACATTGATAGTCTAGGGagggtctgtttttttttcttccgtcccAGTATAAACATCTGTGCTCTTCCGCAGCTCCACTGCAACCTTTGGAtcggtaaaaaaaaatacataaatacagcATATACATTCATCATGCATCAGCTTATAAGGAAATTCGTCTTCACCGAGTCGCATTGTTTGGAGGAGGAGGACAACACGAAAAGTTTCGCGGAGTTGTTTGAGAAGTTGGATGTGAATAAAGATGGAAAAGTGGATGTTTCCGAGCTCAAGACGGGCCTGGCTGCCATGGGCTTCTCTATGGGTAAAGGAGAAGCGCAGaaaattgttACCTCAGGGGATACCGATAAGGATGAAGGGCTGGACTTTGAGGAGTTTTCAAAGTATCTGAAAGAACATGAGAAAAAACTCAGGCTGACCTTTAAGAGTCTGGACAAAAATGAAGATGGTCGCGTCGATGCCAAAGAGATTCAACAGTCACTAAAAGACCTCGGGATTAACTTGTCAGATAAAGACGCTGAGAAGATCCTCCACAGCATTGATGTGGATGGAACCATGACTCTGGACTGGAATGAATGGAGGGAGCATTTCCTCTTTAACCCTGCAGAAGATCTTCAGCAGATCATACGCTACTGGAAAAAATCAACTGTGTTGGACATAGGTGACAGTCTGACTATACCAGATGAGTTCACCGAGGAGGAGAAGACCACCGGCATGTGGTGGAAACAGCTTGCTGCTGGTGGTGTGGCAGGGGCAGTCTCTCGAACAGGCACCGCCCCCCTTGACAGAATGAAAGTCTTCATGCAGGTTCATTCCTCAAAAACCAACAAAATCAGTCTGGTGAACGGGTTCAAGCAGATGATTAAAGAAGGGGGCGTGGCCTCTCTGTGGAGGGGTAACGGAGTCAACGTTATAAAAATCGCCCCAGAAACTGCAATCAAGTTCATGGCTTATGAGCAGTATAAGAAGCTCCTGAGCAAAGACGGAGGAAAAGTCCAGTCCCACGAGAGGTTCATGGCTGGTTCTCTGGCTGGAGCTACTGCTCAGACAGCCATCTACCCCATGGAGGTAATGAAGACCAGGCTTACTCTGAGGAAGACTGGTCAGTACTCTGGGATGTTTGACTGTGCCAAAAAGATCCTGAGGAAGGAAGGAGTGAAAGCCTTTTATAAAGGCTATGTGCCCAATATTCTGGGAATTATTCCTTATGCTGGAATAGATTTAGCGGTGTATGAGACCTTGAAGAACACCTGGTTGTCTCACTATGCTAAAGACACTGCTAACCCAGGAGTGCTGGTTCTCCTCGGCTGTGGGACCATTTCCAGCACATGCGGACAGTTGGCCAGTTACCCTCTCGCTCTGATCCGCACACGCATGCAGGCCATGGCGTCAATGGAAGGATCAGAGCAGGTGTCTATGTCCAAATTAGTGAAGAAGATCATGCAGAAGGAGGGCTTTTTTGGTCTCTATCGTGGGATCCTGCCCAACTTCATGAAAGTGATCCCCGCTGTCAGCATTAGTTATGTGGTGTATGAGTATATGAGGTCTGGGTTAGGCATCTCTAAATGATGAATGTCTTGCATGTTTTTACACGCACAAATTTCATTCACTTCTCTTTGAAAACACCCTCCATGATGGGACAAAATGTTTTGTTCACttaccaaagtaaaaaaaaaagaagccacgATGGTGTCTTGCATTGTGGTCAGGGCCCAACCTAATTCTTGTTTACACTGATGTATAACTGCACCTTTATATGTAATCGATACatttatgacatgttttacaaTTTGTATGATTTTGTCTTGATATTCATGTAATATCTGAGCAAACGATGAAGCCATTGTgcactatataaatgtgtgtatatatataaatgaatataaatgtttagGTGAATTAGGATGGGCCACAGTCGAGTCTTTACACTatgcagaaaaatatatatatccacatttaaaaaatgagaaaAACAGAATCAATGCAAATCGGGGAGCCACGCAATGACAAGAGCTTAGTGTGCCTTATATCATTAGTTCAGTCTTTGTGAGGGTCTCACTAATTCCTGACCTGGAAAGATCAATGTTATTGAACTTGTGTTGCCTTTTGATCcccattgttttgttattttagaaACTCCTGTTTACATTAAAGGTTGTATTTTAATA

Function

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0010941 regulation of cell death biological_process
GO:0055085 transmembrane transport biological_process
GO:0034599 cellular response to oxidative stress biological_process
GO:0006839 mitochondrial transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-183 Predicted to enable ATP transmembrane transporter activity and calcium ion binding activity. Predicted to be involved in several processes, including ATP transport; cellular response to calcium ion; and cellular response to oxidative stress. Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrion. Predicted to be integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; anterior axial hypoblast; hatching gland; periderm; and polster. Orthologous to human SLC25A24 (solute carrier family 25 member 24).

Ensembl:

ensembl_id ENSDART00000033325

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036898 lncRNA downstream 3255 34645947 ~ 34650661 (-) False XLOC_018231
TCONS_00035907 lncRNA downstream 3283 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00036897 lncRNA downstream 117897 34515508 ~ 34536019 (-) True XLOC_018230
TCONS_00036896 lncRNA downstream 151245 34501770 ~ 34502671 (-) True XLOC_018229
TCONS_00035900 lncRNA downstream 500915 34151733 ~ 34153001 (-) True XLOC_018225
TCONS_00035922 lncRNA upstream 321435 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00035930 lncRNA upstream 799190 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035935 lncRNA upstream 864938 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00036486 lncRNA upstream 890421 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00036487 lncRNA upstream 1558192 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00035906 mRNA downstream 200293 34420623 ~ 34453623 (-) True XLOC_018228
TCONS_00035905 mRNA downstream 265585 34383196 ~ 34388331 (-) True XLOC_018227
TCONS_00035904 mRNA downstream 265592 34343649 ~ 34388324 (-) False XLOC_018227
TCONS_00035901 mRNA downstream 361309 34157308 ~ 34292607 (-) False XLOC_018226
TCONS_00035910 mRNA upstream 32174 34702410 ~ 34711528 (-) False XLOC_018233
TCONS_00035912 mRNA upstream 67502 34737738 ~ 34754617 (-) False XLOC_018234
TCONS_00035913 mRNA upstream 67509 34737745 ~ 34750045 (-) False XLOC_018234
TCONS_00035914 mRNA upstream 75671 34745907 ~ 34750363 (-) True XLOC_018234
TCONS_00035915 mRNA upstream 95947 34766183 ~ 34768301 (-) False XLOC_018235
TCONS_00035885 other downstream 702226 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 952683 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 965317 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 967536 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035876 other downstream 996347 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035911 other upstream 32841 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035933 other upstream 840629 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 871046 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3260451 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 3848461 38518697 ~ 38522649 (-) False XLOC_018280

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_09999928_10011153.mRNA True 2495 mRNA 0.43 12 CI01000325 9999191 ~ 10011153 (-)
bowfin (Amia calva) AMCG00005139 True 4840 mRNA 0.42 9 CM030140.1 16862978 ~ 16875255 (-)