RNA id: TCONS_00035915


Basic Information

Item Value
RNA id TCONS_00035915
length 1450
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_018235
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34766183 ~ 34768301 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGTCCCTCGGTAGAAACTCTGGCATGCTCAGCGCTGTTACCAAGGTTAAAATGCTCAAGATTGAAAACTAGACTTAATCCTTCAGATGATATGAAACCACTtataacttttaaaaagtaactgaGAAGAACGAAGAGCTACTTTCTGCATAGAGTTTCAACATGTCAAGTGGAGTTTTGGGTCGTTTGAGTACACTGACTTTAAGTCTGCAGCAGCTGGGTCAGTTACCACACTTGTCGAACTGGTTGCCTCGTCTGCCTAGACGTCAAGCCACAGTACACGCTTCTGAAGTGCCGAGCCTGTTTCGTGAGCCCTACATCTTGTCTGGTTATCGTCCAGTGCATCAGGAATGGCGGAGCTACTTCTGTAGCCTCTTCCAATGTCACAACGAGCTGCTGAATGTGTGGACACACCTGCTGGCCATCCCTGCCGTGCTACTGCAGTTCTCTTTTTTCGCAGGGGCGTGGGGGCTGACGCTCAATCTGGCCTCTCTGCCTCTGTTCTTGTATGTGCTGTCATCACTTACCTACCTCAGTTTCAGTGTGGCCGCCCACTTGCTGCAGTCTCACTCTGAACTGGCCCATTACTCCCTCTTCTTTGTAGACTACGTTGGTGTGGCTGTTTACCAATATGGCTGCTCAATGGGCCACTATTTTTACTGTTCTGAGCCAGAATGGAGACACAGTCTAGTTGGTGTATTGTTTCTTCCTGGTGCTGCCATGCTGGCCTGGTTGTCCTGTGCCAGTTGCTGCTACTCCAAATTCCGTTACCGCCGTCCTTACCCATTTCACCGGAAGATCTGCCAGATCATTCCCACCAGCTTGGCATACTTGCTTGACATAAGCCCTGTAGCGCACCGCCTGCTCACCAAATCTTGGGATGAGCCGGTGTTGGTGTTTCACGCTATGCAAGTGGCGTTTTTCCTTTTGGCAGCTCTGTTTTTCTCGTGCCCTGTTCCTGAGCGCTTCTTTCCAGGAAGGTGTGATATTGTAGGCCACGGACATCAGATCTTCCACATCTTCCTGGTCTTGTGCACCATGTGCCAGCTGGAGGCAATGTTTAGAGACTTCCTAGTACATCAGCAGTCTGTCGTAGATGCGCACGGAGAGCACTTCATCTTACTGGCCGGAGGATCCTTCTTCTTGTTGGTGTTGTGCAGCATTCTGACTGCAGTTCTGATGAGGGGAGCCGTGCAAAGACAGCTGAGGAAAAAAGACTGAACAAACATGTCTGAAGATTAGGTTAGTTATGAAGTACCAAAAGGTATTTATTGATATCcattttgaattgtttttataGAAGTGCATTCATTATGAGAATTGTGATGGGATgtctttgcttttattttaaatcttaaaagTCCAAGTGTCATGTTGAAATCCCACACCTGCTCCTGAAAAATAGCACAAAAGTTGTTGCatattaaaagttatttatatgTACCATTC

Function

GO:

id name namespace
GO:0048545 response to steroid hormone biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0005496 steroid binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function

KEGG:

id description
ko05207 Chemical carcinogenesis - receptor activation

ZFIN:

id description
ZDB-GENE-030728-3 Enables steroid binding activity. Acts upstream of or within response to steroid hormone and signal transduction. Located in plasma membrane. Is expressed in several structures, including brain; female organism; gill; gonad; and intestine. Orthologous to human PAQR8 (progestin and adipoQ receptor family member 8).

Ensembl:

ensembl_id ENSDART00000142482

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036898 lncRNA downstream 115522 34645947 ~ 34650661 (-) False XLOC_018231
TCONS_00035907 lncRNA downstream 115550 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00036897 lncRNA downstream 230164 34515508 ~ 34536019 (-) True XLOC_018230
TCONS_00036896 lncRNA downstream 263512 34501770 ~ 34502671 (-) True XLOC_018229
TCONS_00035900 lncRNA downstream 613182 34151733 ~ 34153001 (-) True XLOC_018225
TCONS_00035922 lncRNA upstream 223370 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00035930 lncRNA upstream 701125 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035935 lncRNA upstream 766873 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00036486 lncRNA upstream 792356 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00036487 lncRNA upstream 1460127 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00035912 mRNA downstream 11566 34737738 ~ 34754617 (-) False XLOC_018234
TCONS_00035914 mRNA downstream 15820 34745907 ~ 34750363 (-) True XLOC_018234
TCONS_00035913 mRNA downstream 16138 34737745 ~ 34750045 (-) False XLOC_018234
TCONS_00035910 mRNA downstream 54655 34702410 ~ 34711528 (-) False XLOC_018233
TCONS_00035908 mRNA downstream 95947 34653916 ~ 34670236 (-) False XLOC_018232
TCONS_00035917 mRNA upstream 5345 34773646 ~ 34801181 (-) False XLOC_018236
TCONS_00035918 mRNA upstream 26341 34794642 ~ 34801181 (-) False XLOC_018236
TCONS_00035919 mRNA upstream 29526 34797827 ~ 34868814 (-) True XLOC_018236
TCONS_00035920 mRNA upstream 199109 34967410 ~ 34985555 (-) True XLOC_018237
TCONS_00035921 mRNA upstream 223319 34991620 ~ 35012093 (-) False XLOC_018238
TCONS_00035911 other downstream 59611 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 814493 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 1064950 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 1077584 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 1079803 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035933 other upstream 742564 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 772981 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3162386 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 3750396 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 4137230 38905531 ~ 38905613 (-) True XLOC_018288

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_10072629_10073699.mRNA True 1981 mRNA 0.42 1 CI01000325 10072431 ~ 10074411 (-)