RNA id: TCONS_00035916


Basic Information

Item Value
RNA id TCONS_00035916
length 1062
RNA type mRNA
GC content 0.52
exon number 1
gene id XLOC_018235
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34766183 ~ 34768301 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACATGTCAAGTGGAGTTTTGGGTCGTTTGAGTACACTGACTTTAAGTCTGCAGCAGCTGGGTCAGTTACCACACTTGTCGAACTGGTTGCCTCGTCTGCCTAGACGTCAAGCCACAGTACACGCTTCTGAAGTGCCGAGCCTGTTTCGTGAGCCCTACATCTTGTCTGGTTATCGTCCAGTGCATCAGGAATGGCGGAGCTACTTCTGTAGCCTCTTCCAATGTCACAACGAGCTGCTGAATGTGTGGACACACCTGCTGGCCATCCCTGCCGTGCTACTGCAGTTCTCTTTTTTCGCAGGGGCGTGGGGGCTGACGCTCAATCTGGCCTCTCTGCCTCTGTTCTTGTATGTGCTGTCATCACTTACCTACCTCAGTTTCAGTGTGGCCGCCCACTTGCTGCAGTCTCACTCTGAACTGGCCCATTACTCCCTCTTCTTTGTAGACTACGTTGGTGTGGCTGTTTACCAATATGGCTGCTCAATGGGCCACTATTTTTACTGTTCTGAGCCAGAATGGAGACACAGTCTAGTTGGTGTATTGTTTCTTCCTGGTGCTGCCATGCTGGCCTGGTTGTCCTGTGCCAGTTGCTGCTACTCCAAATTCCGTTACCGCCGTCCTTACCCATTTCACCGGAAGATCTGCCAGATCATTCCCACCAGCTTGGCATACTTGCTTGACATAAGCCCTGTAGCGCACCGCCTGCTCACCAAATCTTGGGATGAGCCGGTGTTGGTGTTTCACGCTATGCAAGTGGCGTTTTTCCTTTTGGCAGCTCTGTTTTTCTCGTGCCCTGTTCCTGAGCGCTTCTTTCCAGGAAGGTGTGATATTGTAGGCCACGGACATCAGATCTTCCACATCTTCCTGGTCTTGTGCACCATGTGCCAGCTGGAGGCAATGTTTAGAGACTTCCTAGTACATCAGCAGTCTGTCGTAGATGCGCACGGAGAGCACTTCATCTTACTGGCCGGAGGATCCTTCTTCTTGTTGGTGTTGTGCAGCATTCTGACTGCAGTTCTGATGAGGGGAGCCGTGCAAAGACAGCTGAGGAAAAAAGACTGA

Function

GO:

id name namespace
GO:0048545 response to steroid hormone biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0005496 steroid binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function

KEGG:

id description
ko05207 Chemical carcinogenesis - receptor activation

ZFIN:

id description
ZDB-GENE-030728-3 Enables steroid binding activity. Acts upstream of or within response to steroid hormone and signal transduction. Located in plasma membrane. Is expressed in several structures, including brain; female organism; gill; gonad; and intestine. Orthologous to human PAQR8 (progestin and adipoQ receptor family member 8).

Ensembl:

ensembl_id ENSDART00000186710

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036898 lncRNA downstream 115750 34645947 ~ 34650661 (-) False XLOC_018231
TCONS_00035907 lncRNA downstream 115778 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00036897 lncRNA downstream 230392 34515508 ~ 34536019 (-) True XLOC_018230
TCONS_00036896 lncRNA downstream 263740 34501770 ~ 34502671 (-) True XLOC_018229
TCONS_00035900 lncRNA downstream 613410 34151733 ~ 34153001 (-) True XLOC_018225
TCONS_00035922 lncRNA upstream 224199 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00035930 lncRNA upstream 701954 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035935 lncRNA upstream 767702 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00036486 lncRNA upstream 793185 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00036487 lncRNA upstream 1460956 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00035912 mRNA downstream 11794 34737738 ~ 34754617 (-) False XLOC_018234
TCONS_00035914 mRNA downstream 16048 34745907 ~ 34750363 (-) True XLOC_018234
TCONS_00035913 mRNA downstream 16366 34737745 ~ 34750045 (-) False XLOC_018234
TCONS_00035910 mRNA downstream 54883 34702410 ~ 34711528 (-) False XLOC_018233
TCONS_00035908 mRNA downstream 96175 34653916 ~ 34670236 (-) False XLOC_018232
TCONS_00035917 mRNA upstream 6174 34773646 ~ 34801181 (-) False XLOC_018236
TCONS_00035918 mRNA upstream 27170 34794642 ~ 34801181 (-) False XLOC_018236
TCONS_00035919 mRNA upstream 30355 34797827 ~ 34868814 (-) True XLOC_018236
TCONS_00035920 mRNA upstream 199938 34967410 ~ 34985555 (-) True XLOC_018237
TCONS_00035921 mRNA upstream 224148 34991620 ~ 35012093 (-) False XLOC_018238
TCONS_00035911 other downstream 59839 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 814721 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 1065178 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 1077812 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 1080031 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035933 other upstream 743393 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 773810 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3163215 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 3751225 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 4138059 38905531 ~ 38905613 (-) True XLOC_018288

Expression Profile

//