RNA id: TCONS_00005809


Basic Information

Item Value
RNA id TCONS_00005809
length 674
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_001807
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2499533 ~ 2504042 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTGAAGTGTTTTTATTCAGTTGCGCCTATTTAACAGATTCCCACAAAACATGACGATAAATACATAATTAAGGGTCCCTGTacatttcatcttcatcatcagtgTACTCAGTATTTACAGTCAGATTGAAATACTACAAACATACATGTTATTTACTCTTCAGGCACCTTGTGTGTCCCGttgaaaaacacacagacacttgACGTTGAAAAAAGGAAAAGTCGAACACGTGATTAGCTCCTGACGTCACCTGTAGCAGCACGCTGTTCCAAAAATATCTGGCATTATGAAAAAAGATTAGTCTGTAATACTATTCAGTACATGTACAATACTTTACAATCCTAAAATGATGAATATGACTGCTGTTATGTTACATAGTAAAACGTCACAAGCTGTGAACATCGTATGTCCAAAAAACAAAAGCGCGGGAACTACAGCCCAGCCATCATTAAACGCCGTCCGCGGTCATACAAACATCACCGCGACTTTTAAGCTCTACAAAGAAAGATTCACGTCATTTCACTGCATGATAAATATGACTGGAATGATGCAAAACATATGGGAGAAGATTAAGGGTGGAAAAGAAAATTGACATTCTGTTCATGATGAGGAAGGAATGATGTGTATGTGGAACAGGAAATGAGCGCAGTGATGATTTAGGTTGAGGGTTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005808 lncRNA upstream 61625 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 94755 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003604 lncRNA upstream 508065 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00003603 lncRNA upstream 508065 1982550 ~ 1991468 (+) True XLOC_001804
TCONS_00005669 lncRNA upstream 508370 1966857 ~ 1991163 (+) False XLOC_001804
TCONS_00005670 lncRNA downstream 473493 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005810 lncRNA downstream 758536 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 795842 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 832813 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 1353025 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00003606 mRNA upstream 105742 2232023 ~ 2393791 (+) False XLOC_001805
TCONS_00003607 mRNA upstream 105742 2234283 ~ 2393791 (+) True XLOC_001805
TCONS_00003602 mRNA upstream 598871 1899595 ~ 1900662 (+) True XLOC_001802
TCONS_00003601 mRNA upstream 606438 1849874 ~ 1893095 (+) True XLOC_001801
TCONS_00003600 mRNA upstream 607387 1849874 ~ 1892146 (+) False XLOC_001801
TCONS_00003608 mRNA downstream 24995 2529037 ~ 2550378 (+) True XLOC_001808
TCONS_00003609 mRNA downstream 64751 2568793 ~ 2575387 (+) False XLOC_001809
TCONS_00003610 mRNA downstream 64875 2568917 ~ 2575387 (+) True XLOC_001809
TCONS_00003611 mRNA downstream 78212 2582254 ~ 2585625 (+) True XLOC_001810
TCONS_00003612 mRNA downstream 83192 2587234 ~ 2595731 (+) True XLOC_001811
TCONS_00003605 other upstream 232176 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 834495 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 1694174 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 1992277 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 2287586 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003616 other downstream 184523 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 481002 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 904741 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1989235 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 2482008 4986050 ~ 4987483 (+) True XLOC_001850

Expression Profile

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