RNA id: TCONS_00035928


Basic Information

Item Value
RNA id TCONS_00035928
length 2602
RNA type mRNA
GC content 0.39
exon number 11
gene id XLOC_018242
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35461736 ~ 35471079 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAACCGATCCAAAATCAGCAGGGATATGTGACTCAATGCACACGCACATGAGTCGAGTCATGGTCAGGATGAGGCTCCGCCTGCTCACTGTGGACTTCAGCTGAGGCTCAATGGATCGCTGTTAACGTCGATGTGTTCTGTTGGCAGACTTGTTCAGCTGACTCTGGTCAAGAGGGTATATGAATGGTCAAAGTCAACGTCAGGTTTACAGTTTATTCCTAAGAAGTGGAATTGGTTCTGTGTTATCGCAATGGGGAACTCAAGCGGACACAACAACACTATGACTATCCCACCAGGAAAAGGACCCCATCAAGTGGGATGCACAGACCTGATGGTGGGCCACACAGTCCAGGGTACGTTCATGAGAATCTACTATCCGTGCCAAGCAACCGAGCATCCTCATCTGCCTGATTGGGTCCCGTGTAGGGAGTATTTTAATGGCCTTGCAGACTTCATGAAGATTAACAGAGCACTGAGTGAACGTATTTTCAACTACCTCTTTGGGTCATGTAAAATCCCAGCAGCCTGGAATGCGTCATTTAAACCGGATGGGAAATATCCTGTTATAATTTTTTCCCATGGACTGGGCGCTTTCAGGACATTGTATTCTGCCATATGTGTTGAACTGGCCTCACAGGGCTTCATTGTTGCTGCGGTGGAGCACAGGGATGAATCTTCGTCtgcaacattttatttcaaaGAAAATGCTGAGCCAGGAACAAAAAGACATATGTCATCTGACATCTCTAAACCTGTGTCTGATAATCTTGAAGAGGTTTGGATGTACTACAGACCATTGAAGACGGGCGAGAATGAGTTTCCCCTGAGAAACAAACAAGTAAAGCAGAGAGCAGATGAATGCATCAGAGCTTTGGATATTCTCTTTGACATCCATTCAGGAAAGTCTGTGGAAAACGTCTTGCAGTCCAACTTTGATCTGTCAACAATGGAGAATTCCATGGATTTGTGTAGAATAGCGGTTATGGGACATTCTTTCGGAGGCGCGACAGTGATTGAATGTTTGTGCAAGGAAGTCCGATTCAAGTGTGGTGTGGCACTGGACACCTGGATGTTTCCCTTGGATGAGGAGATCTTCCCTGGAGTGAAGCAGCCAATCTTTTTTATTAACTCTGAAAAATTTCAGTGGATTGGCAATATCATTCGCATGAAGAAGTTGGACTCTGCTATCTTTCCCAGAAAAATGATTACCATCAAAGGCACAGTCCATCAGAGCTTTCCAGACTTCACATTTCTTACGGGAAACTGGATTGGACGGCTCATGAAGCTGAAAGGAGAGATTGATCCACACATTGCCTTGGATCTTTGTAACAAAGCAACTTTGGCTTTTCTTCAGAGGCACTTGTcTCTAAACAGAGACTTCAATCAGTGGGATCCTTTAATTGAAGGAAAAGATGACAACTTGATTCCAGGAACCAATATTACTATACCACATTCATCTATTTAATCatgtaacataaaataataagtgcagtGATTTTTATAATGTTGTGAATGCACATGTAACGGGGAAAATgctttcatgttcaagaaagggCCAATTTATCGATTTGCAAGAAAGTTTTGAAATTTCATCAAGGAGGCTAAATATTGACTGCAGTGTATGAGAATGATGGGTTAAAATGATATGTAAAAATAGTCTCTACAGGATGACATATGAGAGGTTTCATAAGCTACCATCCACCTGCTTCCCAAAACAGACACAGTGCaatagatttacattttttacaacacatcaCCGTCCTTTGTCCTAAGCCTTAATATTTTTATAGTCCTTTAGAGGTTTTCGATATCAATGCAATGTTTTTAATTCTGTGACCAATGTTAATGGAAGGCAGATAGCAGACAATTAGTTCCAGTTTTAATTCTATCAACTGTATTCTTCATATCCTGTGTTGACCAATCATGGTAATGATCTTAACATAGTGGAGGGGCTTGTGGTGGAGTCTAAGATCTGTAATTATGATTTGTGATTTCCAGTGAAATCAGTTTCTACACTACTAAACTGCtcgttaataaatatattattttttaatctaatGAAATTTGGGTATTTTGGTTTCCAGTACAACTACACAAAAAAGCACAAGTTATGTTTATGTATTTGAGATATTGTTTATTAAACGTCTTACctttggtttgtttttgtctcTTACAAAGTCTGAATAACAACATATTTTTAAGAACGGTTGATATAAGTGCGACACACAAAGAGTGcctatttattaaagaaaatttCAACCAGTTACCACAAGATGCAGCAGACTACCTTTTCAccacaaatgtaaacatttaagaACTTTCTAAACAAACTACAAAATCCCAGGCTAACATCTAACTTGAgagttttttatataataatgtatacaaTTAAAGGCTGTgtagtaaacaaaaaacaaagcagcctTAATCCTTACAGAGAAACAACTAAACTGTAGAAAGcaaaactcaaatttgaaaaaaaGCAGAAGTGCTTTTGTTGCTATTATATGATTTATGATTTAAATTGAGTTGACAGGAATTACTTAACACATCAACAAGTTTTtggctatttaaatttaaatgtaaaaaaacaacaaca

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity molecular_function

KEGG:

id description
ko00565 Ether lipid metabolism

ZFIN:

id description
ZDB-GENE-040426-2248 Predicted to enable 1-alkyl-2-acetylglycerophosphocholine esterase activity. Predicted to act upstream of or within lipid catabolic process. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); glomerulonephritis (multiple); hemolytic-uremic syndrome; proteinuria (multiple); and type 2 diabetes mellitus. Orthologous to several human genes including PLA2G7 (phospholipase A2 group VII).

Ensembl:

ensembl_id ENSDART00000016090

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035922 lncRNA downstream 467613 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00036898 lncRNA downstream 811075 34645947 ~ 34650661 (-) False XLOC_018231
TCONS_00035907 lncRNA downstream 811103 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00036897 lncRNA downstream 925717 34515508 ~ 34536019 (-) True XLOC_018230
TCONS_00036896 lncRNA downstream 959065 34501770 ~ 34502671 (-) True XLOC_018229
TCONS_00035935 lncRNA upstream 64180 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00036486 lncRNA upstream 89663 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00036487 lncRNA upstream 757434 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00035950 lncRNA upstream 948505 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00035955 lncRNA upstream 1204573 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035927 mRNA downstream 215586 35208855 ~ 35246150 (-) True XLOC_018241
TCONS_00035926 mRNA downstream 385349 35073981 ~ 35076387 (-) True XLOC_018240
TCONS_00035925 mRNA downstream 408913 35049351 ~ 35052823 (-) True XLOC_018239
TCONS_00035924 mRNA downstream 409272 35014146 ~ 35052464 (-) False XLOC_018239
TCONS_00035923 mRNA downstream 421695 35013434 ~ 35040041 (-) False XLOC_018239
TCONS_00035931 mRNA upstream 24693 35495687 ~ 35512932 (-) False XLOC_018243
TCONS_00035932 mRNA upstream 29050 35500044 ~ 35508805 (-) True XLOC_018243
TCONS_00035934 mRNA upstream 46578 35517572 ~ 35536668 (-) False XLOC_018245
TCONS_00035937 mRNA upstream 80642 35551636 ~ 35557902 (-) False XLOC_018247
TCONS_00035938 mRNA upstream 80772 35551766 ~ 35554451 (-) True XLOC_018247
TCONS_00035911 other downstream 755164 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 1510046 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 1760503 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 1773137 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 1775356 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035933 other upstream 39871 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 70288 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 2459693 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 3047703 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 3434537 38905531 ~ 38905613 (-) True XLOC_018288

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_10486953_10491074.mRNA True 2067 mRNA 0.40 10 CI01000325 10486276 ~ 10491074 (-)