RNA id: TCONS_00035932


Basic Information

Item Value
RNA id TCONS_00035932
length 2601
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_018243
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35495687 ~ 35512932 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgacGAATGCTTTTAATGTGCTGAATGCCTTCAACTCTTTGACTATGCAAGCCAGCCTCCTCACAGGGTTAAATACATACTCCCACAATTTCACAGTGTCTCTCGGTGCAGTGTTTGCCACCTCCAAAGTTCAAGGCATCATTACTACACTGCTGACAAATCCAGCGATTTACACACTCAATGTTAAGACTCTAGGCTTAGTATACATTGAGGCACCTGCAGGAAAATTATGCTATAATTCAAGACAACAGCTGAACTGTACCTCTATAGAAGCTATGAGCAAATGTGTATGGCAGATGTCCAGAGGCGACGAAGCGCCATTGACTTTGGGACCAGGGAGTGAAATAATGCTTTCAGATACATGTACAGAAATGTCTGCAGTCACGCTTTTAAAGACAAATGGATACTGGTCAGGAACATACAGCTGCCTTTTTGTCACAGACAACGTAGCTCATATGGCAATGGCACCAGTTGATATTGCACTGCTGCCAGAGGCCAGTAATGTGACAAGCAATCCACAAACGATAGACTGCTCTGCATCATCAACCGCTAAAGTTACCATCACATGTTCCATCTTCAACAGCACTGAAACGTACAAGTCCCAACTAAAACTCGGAAGTATGGAAAATCTTACACCAACTAAATTAGAGAGCAATGGTTTAATCAAGTATTCGGCAGATTTCACTGTGAACTGTCTGGCAACAGGAAAACCCCCTTCCCTCACCGCCAGCTGTGTATTAGTGAACTCTTTAAATCAGCAGCGAAATTTCTCAGCAAGCGTATCAGTCATTTACCCCAATGACCTCTTTTGTGCAGCAGAAGTCATTTCTACCAGAACATGGCCAAAAACCAAGAATAATGATACAGCTGTAATAGATTGTACGGCAACAGGGAGACAAGGCACTCTGACACGCAAATGCAATGGAAAAACATGGGGCCAAGAAGTTTCTCTGTGTGTCAAAGCGTTCCTGAGCAATGTAGCTTCACAAGCATCGGATTTTGAAAAAGGACTTGGAGCAACACAAGGGGGCGCACAGTACATCTTTCaaagtttaaaaaacaacacTGCTAGTGAAGAAGATGGTGAGAACAGTTTTGGAGACATCAGCACAGCAGTCAACGTTTTCCAGACTATGAAAGCGGCATCAGTCAATGTTCCACTAGGCGAAAACCTTCTTCCAGATTTCCTGGAATCAGCCAGCAGCATATTGAACGGATCCTGGGAAGTGGGAGACAAGACACAGAGCGGGGCGCTGGCCAGCCAGTATCTGTCATCTGTAGAAGGCCTTGTGAAAAGCATCCGAATAAACACCAGCGAGGGCTACAATGCCTCAAACATCCAGCTGCAGGTCTGCAAAGGTGGCTCCGGTTGCAATAAAACCATTTTCAATGTGGATATTGAGGTGAACGCAACAGCAGATATGGTCAAAACGGTAGGACTACAGAGCTTGGCCAATCTTCTGCCAAAGGTGGGCTACGAAAATTCCCTTTTTCCTAGCATAGTCGTATCCAGCACAGTTGAGAACAACACTCAGGCGTCAGTCAACATCAGACTGGCTTTTCCAAATGAAGAGGGCATCAATGCCGCAATGCAATGTGTTTTCTGGAACGTCTCAGAAGAGAGATGGTCAGACGAGGGCTGCGTGTACGTAAAGGGTCGTGGAGGTGAAGGCTACTGCCAGTGCAACCATCTGACCTCCTTCTCCATGCTCATGTCCAAGTACCCAATAAGCATGCCCTTTCTAGATCAGCTCACATACATCGGACTGGGCGTCTCCATATGCTCTCTGTTGGCCTACATCATCATTGAGTTCTTGGTCTGGTCCGCCGTGGTCAAATCCAATCTTTCCCACTTCCGGCACACCGCACTCGTCAACATCGCTCTCTCTCTGCTATTGGCTGACTGCAGTTTCTTAGCTTCCTCCTTCCCGTCAATCCTAAATGAAACCCTCTGCCTTGTTCTGGTGGTGGCGAAGCATTACTTCTTCCTGGCGATGTTCTTTTGGATGCTTTGTCTGAGTCTCATGCTGGTCCACCAGCTCATTTTCGTTTTCAGCCGCATTGGGAAAAAGGTGTACATGATTCTAGGATTCACCATCGGCTATTTTTGTCCGACGGTGACTGTGGCGGTTACATATGTGTACTACGAAGAAGCAACTAGCATCCCATATTATAGCTCCAAAACCTGCTGGCTCACCTATCAGTCGCCTATGCAGGGATCCATCCACGCTTTTCTGTTTCCTGTTGGGACAATTGTGCTGGTGAACATGTGTTCCATGCTGGTGGTCATAGCAACCGTTTTAAAGCCGTCCGGAGCTGAGACAAACAAAAAGGGGGATAAGGATGCAGCAAAAAGCATCATCAAAGTCATACTCTTCCTCACACCTGTTTTTGGTGGGACTTGGATTCTGGGGCTTTTTGTGTTTCTGATAGATGACTCTTCGCAGTTTATTACATACTTAGTGAATTATTTGTTCACCATTCTCAACTCATTGCAGGGCTTCTTCATCTTGTTGACTGGATGTTTTGCAGAGAAAAGGGTAGGCATTGCTATTATTTTGATAatcaattatgttattaattactcactctcatgttga

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-207 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart; integument; liver; muscle; and pleuroperitoneal region. Orthologous to human ADGRF3 (adhesion G protein-coupled receptor F3).

Ensembl:

ensembl_id ENSDART00000169538

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035930 lncRNA downstream 28965 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035922 lncRNA downstream 505921 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00036898 lncRNA downstream 849383 34645947 ~ 34650661 (-) False XLOC_018231
TCONS_00035907 lncRNA downstream 849411 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00036897 lncRNA downstream 964025 34515508 ~ 34536019 (-) True XLOC_018230
TCONS_00035935 lncRNA upstream 26369 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00036486 lncRNA upstream 51852 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00036487 lncRNA upstream 719623 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00035950 lncRNA upstream 910694 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00035955 lncRNA upstream 1166762 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035928 mRNA downstream 29050 35461736 ~ 35470994 (-) False XLOC_018242
TCONS_00035929 mRNA downstream 29153 35468260 ~ 35470891 (-) False XLOC_018242
TCONS_00035927 mRNA downstream 253894 35208855 ~ 35246150 (-) True XLOC_018241
TCONS_00035926 mRNA downstream 423657 35073981 ~ 35076387 (-) True XLOC_018240
TCONS_00035925 mRNA downstream 447221 35049351 ~ 35052823 (-) True XLOC_018239
TCONS_00035934 mRNA upstream 8767 35517572 ~ 35536668 (-) False XLOC_018245
TCONS_00035937 mRNA upstream 42831 35551636 ~ 35557902 (-) False XLOC_018247
TCONS_00035938 mRNA upstream 42961 35551766 ~ 35554451 (-) True XLOC_018247
TCONS_00035939 mRNA upstream 59747 35568552 ~ 35578435 (-) False XLOC_018249
TCONS_00035940 mRNA upstream 67934 35576739 ~ 35706379 (-) True XLOC_018249
TCONS_00035911 other downstream 793472 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 1548354 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 1798811 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 1811445 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 1813664 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035933 other upstream 2060 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 32477 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 2421882 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 3009892 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 3396726 38905531 ~ 38905613 (-) True XLOC_018288

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU537670 True 249 lncRNA 0.46 2 CI01000325 10518224 ~ 10518552 (+)